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USMG5 (up-regulated during skeletal muscle growth 5 homolog (mouse))

Identity

Alias_namesupregulated during skeletal muscle growth 5
upregulated during skeletal muscle growth 5 homolog (mouse)
Alias_symbol (synonym)MGC14697
bA792D24.4
DAPIT
Other aliasHCVFTP2
HGNC (Hugo) USMG5
LocusID (NCBI) 84833
Atlas_Id 75520
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103389051 and ends at 103396513 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LONRF2 (2q11.2) / USMG5 (10q24.33)USMG5 (10q24.33) / BAIAP2 (17q25.3)USMG5 (10q24.33) / NCL (2q37.1)
USMG5 (10q24.33) / USMG5 (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USMG5   30889
Cards
Entrez_Gene (NCBI)USMG5  84833  up-regulated during skeletal muscle growth 5 homolog (mouse)
AliasesDAPIT; HCVFTP2; bA792D24.4
GeneCards (Weizmann)USMG5
Ensembl hg19 (Hinxton)ENSG00000173915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173915 [Gene_View]  chr10:103389051-103396513 [Contig_View]  USMG5 [Vega]
ICGC DataPortalENSG00000173915
TCGA cBioPortalUSMG5
AceView (NCBI)USMG5
Genatlas (Paris)USMG5
WikiGenes84833
SOURCE (Princeton)USMG5
Genetics Home Reference (NIH)USMG5
Genomic and cartography
GoldenPath hg38 (UCSC)USMG5  -     chr10:103389051-103396513 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USMG5  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblUSMG5 - 10q24.33 [CytoView hg19]  USMG5 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBIUSMG5 [Mapview hg19]  USMG5 [Mapview hg38]
OMIM615204   
Gene and transcription
Genbank (Entrez)AI479343 AJ272056 AK311888 AL110185 AY740522
RefSeq transcript (Entrez)NM_001206426 NM_001206427 NM_032747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USMG5
Cluster EST : UnigeneHs.732499 [ NCBI ]
CGAP (NCI)Hs.732499
Alternative Splicing GalleryENSG00000173915
Gene ExpressionUSMG5 [ NCBI-GEO ]   USMG5 [ EBI - ARRAY_EXPRESS ]   USMG5 [ SEEK ]   USMG5 [ MEM ]
Gene Expression Viewer (FireBrowse)USMG5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84833
GTEX Portal (Tissue expression)USMG5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IX5
Splice isoforms : SwissVarQ96IX5
PhosPhoSitePlusQ96IX5
Domains : Interpro (EBI)DAPIT   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)USMG5
DMDM Disease mutations84833
Blocks (Seattle)USMG5
SuperfamilyQ96IX5
Human Protein AtlasENSG00000173915
Peptide AtlasQ96IX5
HPRD18277
IPIIPI00063903   
Protein Interaction databases
DIP (DOE-UCLA)Q96IX5
IntAct (EBI)Q96IX5
FunCoupENSG00000173915
BioGRIDUSMG5
STRING (EMBL)USMG5
ZODIACUSMG5
Ontologies - Pathways
QuickGOQ96IX5
Ontology : AmiGOmitochondrion  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImitochondrion  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  integral component of membrane  extracellular exosome  
NDEx NetworkUSMG5
Atlas of Cancer Signalling NetworkUSMG5
Wikipedia pathwaysUSMG5
Orthology - Evolution
OrthoDB84833
GeneTree (enSembl)ENSG00000173915
Phylogenetic Trees/Animal Genes : TreeFamUSMG5
HOVERGENQ96IX5
HOGENOMQ96IX5
Homologs : HomoloGeneUSMG5
Homology/Alignments : Family Browser (UCSC)USMG5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSMG5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USMG5
dbVarUSMG5
ClinVarUSMG5
1000_GenomesUSMG5 
Exome Variant ServerUSMG5
ExAC (Exome Aggregation Consortium)USMG5 (select the gene name)
Genetic variants : HAPMAP84833
Genomic Variants (DGV)USMG5 [DGVbeta]
DECIPHERUSMG5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSMG5 
Mutations
ICGC Data PortalUSMG5 
TCGA Data PortalUSMG5 
Broad Tumor PortalUSMG5
OASIS PortalUSMG5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSMG5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSMG5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch USMG5
DgiDB (Drug Gene Interaction Database)USMG5
DoCM (Curated mutations)USMG5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USMG5 (select a term)
intoGenUSMG5
Cancer3DUSMG5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615204   
Orphanet
MedgenUSMG5
Genetic Testing Registry USMG5
NextProtQ96IX5 [Medical]
TSGene84833
GENETestsUSMG5
Target ValidationUSMG5
Huge Navigator USMG5 [HugePedia]
snp3D : Map Gene to Disease84833
BioCentury BCIQUSMG5
ClinGenUSMG5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84833
Chemical/Pharm GKB GenePA134968209
Clinical trialUSMG5
Miscellaneous
canSAR (ICR)USMG5 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSMG5
EVEXUSMG5
GoPubMedUSMG5
iHOPUSMG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:19 CEST 2017

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