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USO1 (USO1 vesicle transport factor)

Identity

Alias (NCBI)P115
TAP
VDP
HGNC (Hugo) USO1
HGNC Alias symbTAP
VDP
p115
HGNC Alias namevesicle docking protein
 transcytosis associated protein
HGNC Previous nameUSO1 homolog, vesicle docking protein (yeast)
 USO1 vesicle docking protein homolog (yeast)
LocusID (NCBI) 8615
Atlas_Id 54044
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75724522 and ends at 75814289 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MALAT1 (11q13.1) / USO1 (4q21.1)MAPK6 (15q21.2) / USO1 (4q21.1)MINK1 (17p13.2) / USO1 (4q21.1)
USO1 (4q21.1) / SECISBP2L (15q21.1)XPNPEP3 (22q13.2) / USO1 (4q21.1)MAPK6 15q21.2 / USO1 4q21.1
MINK1 17p13.2 / USO1 4q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)USO1   30904
Cards
Entrez_Gene (NCBI)USO1    USO1 vesicle transport factor
AliasesP115; TAP; VDP
GeneCards (Weizmann)USO1
Ensembl hg19 (Hinxton)ENSG00000138768 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138768 [Gene_View]  ENSG00000138768 [Sequence]  chr4:75724522-75814289 [Contig_View]  USO1 [Vega]
ICGC DataPortalENSG00000138768
TCGA cBioPortalUSO1
AceView (NCBI)USO1
Genatlas (Paris)USO1
SOURCE (Princeton)USO1
Genetics Home Reference (NIH)USO1
Genomic and cartography
GoldenPath hg38 (UCSC)USO1  -     chr4:75724522-75814289 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USO1  -     4q21.1   [Description]    (hg19-Feb_2009)
GoldenPathUSO1 - 4q21.1 [CytoView hg19]  USO1 - 4q21.1 [CytoView hg38]
ImmunoBaseENSG00000138768
Genome Data Viewer NCBIUSO1 [Mapview hg19]  
OMIM603344   
Gene and transcription
Genbank (Entrez)AK002093 AK314289 AL832010 AL833753 AW043712
RefSeq transcript (Entrez)NM_001290049 NM_003715
Consensus coding sequences : CCDS (NCBI)USO1
Gene ExpressionUSO1 [ NCBI-GEO ]   USO1 [ EBI - ARRAY_EXPRESS ]   USO1 [ SEEK ]   USO1 [ MEM ]
Gene Expression Viewer (FireBrowse)USO1 [ Firebrowse - Broad ]
GenevisibleExpression of USO1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8615
GTEX Portal (Tissue expression)USO1
Human Protein AtlasENSG00000138768-USO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60763   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60763  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60763
PhosPhoSitePlusO60763
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    P115_Arm_rpt    Uso1_p115_C    Vesicle_Uso1_P115_head   
Domain families : Pfam (Sanger)Arm_vescicular (PF18770)    Uso1_p115_C (PF04871)    Uso1_p115_head (PF04869)   
Domain families : Pfam (NCBI)pfam18770    pfam04871    pfam04869   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)USO1
PDB (RSDB)2W3C   
PDB Europe2W3C   
PDB (PDBSum)2W3C   
PDB (IMB)2W3C   
Structural Biology KnowledgeBase2W3C   
SCOP (Structural Classification of Proteins)2W3C   
CATH (Classification of proteins structures)2W3C   
SuperfamilyO60763
AlphaFold pdb e-kbO60763   
Human Protein Atlas [tissue]ENSG00000138768-USO1 [tissue]
HPRD09135
Protein Interaction databases
DIP (DOE-UCLA)O60763
IntAct (EBI)O60763
BioGRIDUSO1
STRING (EMBL)USO1
ZODIACUSO1
Ontologies - Pathways
QuickGOO60763
Ontology : AmiGOGolgi membrane  fibrillar center  RNA binding  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi stack  microtubule organizing center  cytosol  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  small GTPase mediated signal transduction  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle membrane  membrane  transport vesicle  secretory granule localization  transcytosis  cadherin binding  COPII vesicle coating  Golgi vesicle docking  vesicle fusion with Golgi apparatus  perinuclear region of cytoplasm  membrane fusion  regulation of cellular response to insulin stimulus  
Ontology : EGO-EBIGolgi membrane  fibrillar center  RNA binding  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi stack  microtubule organizing center  cytosol  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  small GTPase mediated signal transduction  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle membrane  membrane  transport vesicle  secretory granule localization  transcytosis  cadherin binding  COPII vesicle coating  Golgi vesicle docking  vesicle fusion with Golgi apparatus  perinuclear region of cytoplasm  membrane fusion  regulation of cellular response to insulin stimulus  
NDEx NetworkUSO1
Atlas of Cancer Signalling NetworkUSO1
Wikipedia pathwaysUSO1
Orthology - Evolution
OrthoDB8615
GeneTree (enSembl)ENSG00000138768
Phylogenetic Trees/Animal Genes : TreeFamUSO1
Homologs : HomoloGeneUSO1
Homology/Alignments : Family Browser (UCSC)USO1
Gene fusions - Rearrangements
Fusion : MitelmanMAPK6/USO1 [15q21.2/4q21.1]  
Fusion : MitelmanMINK1/USO1 [17p13.2/4q21.1]  
Fusion : QuiverUSO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USO1
dbVarUSO1
ClinVarUSO1
MonarchUSO1
1000_GenomesUSO1 
Exome Variant ServerUSO1
GNOMAD BrowserENSG00000138768
Varsome BrowserUSO1
ACMGUSO1 variants
VarityO60763
Genomic Variants (DGV)USO1 [DGVbeta]
DECIPHERUSO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSO1 
Mutations
ICGC Data PortalUSO1 
TCGA Data PortalUSO1 
Broad Tumor PortalUSO1
OASIS PortalUSO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSO1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSO1
Mutations and Diseases : HGMDUSO1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUSO1
DgiDB (Drug Gene Interaction Database)USO1
DoCM (Curated mutations)USO1
CIViC (Clinical Interpretations of Variants in Cancer)USO1
Cancer3DUSO1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603344   
Orphanet
DisGeNETUSO1
MedgenUSO1
Genetic Testing Registry USO1
NextProtO60763 [Medical]
GENETestsUSO1
Target ValidationUSO1
Huge Navigator USO1 [HugePedia]
ClinGenUSO1
Clinical trials, drugs, therapy
MyCancerGenomeUSO1
Protein Interactions : CTDUSO1
Pharm GKB GenePA162408713
PharosO60763
Clinical trialUSO1
Miscellaneous
canSAR (ICR)USO1
HarmonizomeUSO1
DataMed IndexUSO1
Probes
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:35 CEST 2021

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