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USO1 (USO1 vesicle transport factor)

Identity

Alias_namesUSO1 homolog, vesicle docking protein (yeast)
USO1 vesicle docking protein homolog (yeast)
Alias_symbol (synonym)TAP
VDP
p115
Other aliasP115
HGNC (Hugo) USO1
LocusID (NCBI) 8615
Atlas_Id 54044
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75724522 and ends at 75814289 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / USO1 (4q21.1)MAPK6 (15q21.2) / USO1 (4q21.1)MINK1 (17p13.2) / USO1 (4q21.1)
USO1 (4q21.1) / SECISBP2L (15q21.1)XPNPEP3 (22q13.2) / USO1 (4q21.1)MAPK6 15q21.2 / USO1 4q21.1
MINK1 17p13.2 / USO1 4q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USO1   30904
Cards
Entrez_Gene (NCBI)USO1  8615  USO1 vesicle transport factor
AliasesP115; TAP; VDP
GeneCards (Weizmann)USO1
Ensembl hg19 (Hinxton)ENSG00000138768 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138768 [Gene_View]  chr4:75724522-75814289 [Contig_View]  USO1 [Vega]
ICGC DataPortalENSG00000138768
TCGA cBioPortalUSO1
AceView (NCBI)USO1
Genatlas (Paris)USO1
WikiGenes8615
SOURCE (Princeton)USO1
Genetics Home Reference (NIH)USO1
Genomic and cartography
GoldenPath hg38 (UCSC)USO1  -     chr4:75724522-75814289 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USO1  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblUSO1 - 4q21.1 [CytoView hg19]  USO1 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBIUSO1 [Mapview hg19]  USO1 [Mapview hg38]
OMIM603344   
Gene and transcription
Genbank (Entrez)AK002093 AK314289 AL832010 AL833753 AM392946
RefSeq transcript (Entrez)NM_001290049 NM_003715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USO1
Cluster EST : UnigeneHs.744877 [ NCBI ]
CGAP (NCI)Hs.744877
Alternative Splicing GalleryENSG00000138768
Gene ExpressionUSO1 [ NCBI-GEO ]   USO1 [ EBI - ARRAY_EXPRESS ]   USO1 [ SEEK ]   USO1 [ MEM ]
Gene Expression Viewer (FireBrowse)USO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8615
GTEX Portal (Tissue expression)USO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60763   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60763  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60763
Splice isoforms : SwissVarO60763
PhosPhoSitePlusO60763
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-type_fold    Armadillo    Uso1_p115_C    Vesicle_Uso1_P115_head   
Domain families : Pfam (Sanger)Uso1_p115_C (PF04871)    Uso1_p115_head (PF04869)   
Domain families : Pfam (NCBI)pfam04871    pfam04869   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)USO1
DMDM Disease mutations8615
Blocks (Seattle)USO1
PDB (SRS)2W3C   
PDB (PDBSum)2W3C   
PDB (IMB)2W3C   
PDB (RSDB)2W3C   
Structural Biology KnowledgeBase2W3C   
SCOP (Structural Classification of Proteins)2W3C   
CATH (Classification of proteins structures)2W3C   
SuperfamilyO60763
Human Protein AtlasENSG00000138768
Peptide AtlasO60763
HPRD09135
IPIIPI00941161   IPI00031583   IPI01019060   IPI01015928   
Protein Interaction databases
DIP (DOE-UCLA)O60763
IntAct (EBI)O60763
FunCoupENSG00000138768
BioGRIDUSO1
STRING (EMBL)USO1
ZODIACUSO1
Ontologies - Pathways
QuickGOO60763
Ontology : AmiGOGolgi membrane  fibrillar center  RNA binding  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi stack  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  Golgi organization  protein transporter activity  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle membrane  membrane  transport vesicle  transcytosis  cadherin binding  COPII vesicle coating  Golgi vesicle docking  vesicle fusion with Golgi apparatus  perinuclear region of cytoplasm  membrane fusion  
Ontology : EGO-EBIGolgi membrane  fibrillar center  RNA binding  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi stack  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  Golgi organization  protein transporter activity  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle membrane  membrane  transport vesicle  transcytosis  cadherin binding  COPII vesicle coating  Golgi vesicle docking  vesicle fusion with Golgi apparatus  perinuclear region of cytoplasm  membrane fusion  
NDEx NetworkUSO1
Atlas of Cancer Signalling NetworkUSO1
Wikipedia pathwaysUSO1
Orthology - Evolution
OrthoDB8615
GeneTree (enSembl)ENSG00000138768
Phylogenetic Trees/Animal Genes : TreeFamUSO1
HOVERGENO60763
HOGENOMO60763
Homologs : HomoloGeneUSO1
Homology/Alignments : Family Browser (UCSC)USO1
Gene fusions - Rearrangements
Fusion : MitelmanMAPK6/USO1 [15q21.2/4q21.1]  [t(4;15)(q21;q21)]  
Fusion : MitelmanMINK1/USO1 [17p13.2/4q21.1]  [t(4;17)(q21;p13)]  
Fusion: TCGAMAPK6 15q21.2 USO1 4q21.1 BRCA
Fusion: TCGAMINK1 17p13.2 USO1 4q21.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USO1
dbVarUSO1
ClinVarUSO1
1000_GenomesUSO1 
Exome Variant ServerUSO1
ExAC (Exome Aggregation Consortium)USO1 (select the gene name)
Genetic variants : HAPMAP8615
Genomic Variants (DGV)USO1 [DGVbeta]
DECIPHERUSO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSO1 
Mutations
ICGC Data PortalUSO1 
TCGA Data PortalUSO1 
Broad Tumor PortalUSO1
OASIS PortalUSO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USO1
DgiDB (Drug Gene Interaction Database)USO1
DoCM (Curated mutations)USO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USO1 (select a term)
intoGenUSO1
Cancer3DUSO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603344   
Orphanet
MedgenUSO1
Genetic Testing Registry USO1
NextProtO60763 [Medical]
TSGene8615
GENETestsUSO1
Huge Navigator USO1 [HugePedia]
snp3D : Map Gene to Disease8615
BioCentury BCIQUSO1
ClinGenUSO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8615
Chemical/Pharm GKB GenePA162408713
Clinical trialUSO1
Miscellaneous
canSAR (ICR)USO1 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSO1
EVEXUSO1
GoPubMedUSO1
iHOPUSO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:43:30 CEST 2017

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