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USP16 (ubiquitin specific peptidase 16)

Identity

Alias (NCBI)UBP-M
UBPM
HGNC (Hugo) USP16
HGNC Alias symbUbp-M
HGNC Previous nameubiquitin specific protease 16
LocusID (NCBI) 10600
Atlas_Id 51008
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 29024668 and ends at 29054486 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
USP16 (21q21.3) / CNBD2 (20q11.23)USP16 (21q21.3) / HOXA10-HOXA9 (7p15.2)USP16 (21q21.3) / PRDX1 (1p34.1)
USP16 (21q21.3) / RUNX1 (21q22.12)USP16 (21q21.3) / USP16 (21q21.3)USP16 21q21.3 C20orf152

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  del(21)(q21q22) USP16/RUNX1


External links

Nomenclature
HGNC (Hugo)USP16   12614
Cards
Entrez_Gene (NCBI)USP16    ubiquitin specific peptidase 16
AliasesUBP-M; UBPM
GeneCards (Weizmann)USP16
Ensembl hg19 (Hinxton)ENSG00000156256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156256 [Gene_View]  ENSG00000156256 [Sequence]  chr21:29024668-29054486 [Contig_View]  USP16 [Vega]
ICGC DataPortalENSG00000156256
TCGA cBioPortalUSP16
AceView (NCBI)USP16
Genatlas (Paris)USP16
SOURCE (Princeton)USP16
Genetics Home Reference (NIH)USP16
Genomic and cartography
GoldenPath hg38 (UCSC)USP16  -     chr21:29024668-29054486 +  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP16  -     21q21.3   [Description]    (hg19-Feb_2009)
GoldenPathUSP16 - 21q21.3 [CytoView hg19]  USP16 - 21q21.3 [CytoView hg38]
ImmunoBaseENSG00000156256
Genome Data Viewer NCBIUSP16 [Mapview hg19]  
OMIM604735   
Gene and transcription
Genbank (Entrez)AF113219 AF126736 AK023247 AK025104 AK025989
RefSeq transcript (Entrez)NM_001001992 NM_001032410 NM_006447
Consensus coding sequences : CCDS (NCBI)USP16
Gene ExpressionUSP16 [ NCBI-GEO ]   USP16 [ EBI - ARRAY_EXPRESS ]   USP16 [ SEEK ]   USP16 [ MEM ]
Gene Expression Viewer (FireBrowse)USP16 [ Firebrowse - Broad ]
GenevisibleExpression of USP16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10600
GTEX Portal (Tissue expression)USP16
Human Protein AtlasENSG00000156256-USP16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)USP16
Human Protein Atlas [tissue]ENSG00000156256-USP16 [tissue]
HPRD06881
Protein Interaction databases
BioGRIDUSP16
STRING (EMBL)USP16
ZODIACUSP16
Ontologies - Pathways
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSP16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:37:36 CEST 2021

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