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USP17L1 (ubiquitin specific peptidase 17-like family member 1)

Identity

Alias_namesUSP17L1P
ubiquitin specific peptidase 17-like family member 1, pseudogene
Other alias
HGNC (Hugo) USP17L1
LocusID (NCBI) 401447
Atlas_Id 75523
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7332387 and ends at 7333979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L1   37182
Cards
Entrez_Gene (NCBI)USP17L1  401447  ubiquitin specific peptidase 17-like family member 1
AliasesUSP17L1P
GeneCards (Weizmann)USP17L1
Ensembl hg19 (Hinxton)ENSG00000230549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230549 [Gene_View]  chr8:7332387-7333979 [Contig_View]  USP17L1 [Vega]
ICGC DataPortalENSG00000230549
TCGA cBioPortalUSP17L1
AceView (NCBI)USP17L1
Genatlas (Paris)USP17L1
WikiGenes401447
SOURCE (Princeton)USP17L1
Genetics Home Reference (NIH)USP17L1
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L1  -     chr8:7332387-7333979 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L1  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L1 - 8p23.1 [CytoView hg19]  USP17L1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L1 [Mapview hg19]  USP17L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256873
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_016610 NT_187570
Consensus coding sequences : CCDS (NCBI)USP17L1
Cluster EST : UnigeneHs.653091 [ NCBI ]
CGAP (NCI)Hs.653091
Alternative Splicing GalleryENSG00000230549
Gene ExpressionUSP17L1 [ NCBI-GEO ]   USP17L1 [ EBI - ARRAY_EXPRESS ]   USP17L1 [ SEEK ]   USP17L1 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401447
GTEX Portal (Tissue expression)USP17L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTZ2
Splice isoforms : SwissVarQ7RTZ2
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ7RTZ2
Domaine pattern : Prosite (Expaxy)USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L1
DMDM Disease mutations401447
Blocks (Seattle)USP17L1
SuperfamilyQ7RTZ2
Human Protein AtlasENSG00000230549
Peptide AtlasQ7RTZ2
IPIIPI00394951   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTZ2
IntAct (EBI)Q7RTZ2
FunCoupENSG00000230549
BioGRIDUSP17L1
STRING (EMBL)USP17L1
ZODIACUSP17L1
Ontologies - Pathways
QuickGOQ7RTZ2
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L1
Atlas of Cancer Signalling NetworkUSP17L1
Wikipedia pathwaysUSP17L1
Orthology - Evolution
OrthoDB401447
GeneTree (enSembl)ENSG00000230549
Phylogenetic Trees/Animal Genes : TreeFamUSP17L1
HOVERGENQ7RTZ2
HOGENOMQ7RTZ2
Homologs : HomoloGeneUSP17L1
Homology/Alignments : Family Browser (UCSC)USP17L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L1
dbVarUSP17L1
ClinVarUSP17L1
1000_GenomesUSP17L1 
Exome Variant ServerUSP17L1
ExAC (Exome Aggregation Consortium)USP17L1 (select the gene name)
Genetic variants : HAPMAP401447
Genomic Variants (DGV)USP17L1 [DGVbeta]
DECIPHERUSP17L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L1 
Mutations
ICGC Data PortalUSP17L1 
TCGA Data PortalUSP17L1 
Broad Tumor PortalUSP17L1
OASIS PortalUSP17L1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L1
BioMutasearch USP17L1
DgiDB (Drug Gene Interaction Database)USP17L1
DoCM (Curated mutations)USP17L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L1 (select a term)
intoGenUSP17L1
Cancer3DUSP17L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L1
Genetic Testing Registry USP17L1
NextProtQ7RTZ2 [Medical]
TSGene401447
GENETestsUSP17L1
Target ValidationUSP17L1
Huge Navigator USP17L1 [HugePedia]
snp3D : Map Gene to Disease401447
BioCentury BCIQUSP17L1
ClinGenUSP17L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401447
Chemical/Pharm GKB GenePA166123752
Clinical trialUSP17L1
Miscellaneous
canSAR (ICR)USP17L1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L1
EVEXUSP17L1
GoPubMedUSP17L1
iHOPUSP17L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:21 CEST 2017

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