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USP17L10 (ubiquitin specific peptidase 17-like family member 10)

Identity

Other alias-
HGNC (Hugo) USP17L10
LocusID (NCBI) 100287144
Atlas_Id 75524
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9210657 and ends at 9212249 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L10   44438
Cards
Entrez_Gene (NCBI)USP17L10  100287144  ubiquitin specific peptidase 17-like family member 10
Aliases
GeneCards (Weizmann)USP17L10
Ensembl hg19 (Hinxton)ENSG00000231396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231396 [Gene_View]  chr4:9210657-9212249 [Contig_View]  USP17L10 [Vega]
ICGC DataPortalENSG00000231396
TCGA cBioPortalUSP17L10
AceView (NCBI)USP17L10
Genatlas (Paris)USP17L10
WikiGenes100287144
SOURCE (Princeton)USP17L10
Genetics Home Reference (NIH)USP17L10
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L10  -     chr4:9210657-9212249 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L10  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L10 - 4p16.1 [CytoView hg19]  USP17L10 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L10 [Mapview hg19]  USP17L10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L10
Cluster EST : UnigeneHs.741130 [ NCBI ]
CGAP (NCI)Hs.741130
Alternative Splicing GalleryENSG00000231396
Gene ExpressionUSP17L10 [ NCBI-GEO ]   USP17L10 [ EBI - ARRAY_EXPRESS ]   USP17L10 [ SEEK ]   USP17L10 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287144
GTEX Portal (Tissue expression)USP17L10
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JJH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JJH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JJH3
Splice isoforms : SwissVarC9JJH3
PhosPhoSitePlusC9JJH3
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L10
DMDM Disease mutations100287144
Blocks (Seattle)USP17L10
SuperfamilyC9JJH3
Human Protein AtlasENSG00000231396
Peptide AtlasC9JJH3
IPIIPI00935891   
Protein Interaction databases
DIP (DOE-UCLA)C9JJH3
IntAct (EBI)C9JJH3
FunCoupENSG00000231396
BioGRIDUSP17L10
STRING (EMBL)USP17L10
ZODIACUSP17L10
Ontologies - Pathways
QuickGOC9JJH3
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L10
Atlas of Cancer Signalling NetworkUSP17L10
Wikipedia pathwaysUSP17L10
Orthology - Evolution
OrthoDB100287144
GeneTree (enSembl)ENSG00000231396
Phylogenetic Trees/Animal Genes : TreeFamUSP17L10
HOVERGENC9JJH3
HOGENOMC9JJH3
Homologs : HomoloGeneUSP17L10
Homology/Alignments : Family Browser (UCSC)USP17L10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L10
dbVarUSP17L10
ClinVarUSP17L10
1000_GenomesUSP17L10 
Exome Variant ServerUSP17L10
ExAC (Exome Aggregation Consortium)USP17L10 (select the gene name)
Genetic variants : HAPMAP100287144
Genomic Variants (DGV)USP17L10 [DGVbeta]
DECIPHERUSP17L10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L10 
Mutations
ICGC Data PortalUSP17L10 
TCGA Data PortalUSP17L10 
Broad Tumor PortalUSP17L10
OASIS PortalUSP17L10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L10
BioMutasearch USP17L10
DgiDB (Drug Gene Interaction Database)USP17L10
DoCM (Curated mutations)USP17L10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L10 (select a term)
intoGenUSP17L10
Cancer3DUSP17L10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L10
Genetic Testing Registry USP17L10
NextProtC9JJH3 [Medical]
TSGene100287144
GENETestsUSP17L10
Target ValidationUSP17L10
Huge Navigator USP17L10 [HugePedia]
snp3D : Map Gene to Disease100287144
BioCentury BCIQUSP17L10
ClinGenUSP17L10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287144
Chemical/Pharm GKB GenePA166049128
Clinical trialUSP17L10
Miscellaneous
canSAR (ICR)USP17L10 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L10
EVEXUSP17L10
GoPubMedUSP17L10
iHOPUSP17L10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:20 CEST 2017

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