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USP17L11 (ubiquitin specific peptidase 17-like family member 11)

Identity

Other alias-
HGNC (Hugo) USP17L11
LocusID (NCBI) 100287178
Atlas_Id 75525
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9215405 and ends at 9216997 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L11   44439
Cards
Entrez_Gene (NCBI)USP17L11  100287178  ubiquitin specific peptidase 17-like family member 11
Aliases
GeneCards (Weizmann)USP17L11
Ensembl hg19 (Hinxton)ENSG00000233136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233136 [Gene_View]  chr4:9215405-9216997 [Contig_View]  USP17L11 [Vega]
ICGC DataPortalENSG00000233136
TCGA cBioPortalUSP17L11
AceView (NCBI)USP17L11
Genatlas (Paris)USP17L11
WikiGenes100287178
SOURCE (Princeton)USP17L11
Genetics Home Reference (NIH)USP17L11
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L11  -     chr4:9215405-9216997 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L11  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L11 - 4p16.1 [CytoView hg19]  USP17L11 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L11 [Mapview hg19]  USP17L11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L11
Cluster EST : UnigeneHs.722783 [ NCBI ]
CGAP (NCI)Hs.722783
Alternative Splicing GalleryENSG00000233136
Gene ExpressionUSP17L11 [ NCBI-GEO ]   USP17L11 [ EBI - ARRAY_EXPRESS ]   USP17L11 [ SEEK ]   USP17L11 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287178
GTEX Portal (Tissue expression)USP17L11
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JVI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JVI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JVI0
Splice isoforms : SwissVarC9JVI0
PhosPhoSitePlusC9JVI0
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L11
DMDM Disease mutations100287178
Blocks (Seattle)USP17L11
SuperfamilyC9JVI0
Human Protein AtlasENSG00000233136
Peptide AtlasC9JVI0
IPIIPI00938219   
Protein Interaction databases
DIP (DOE-UCLA)C9JVI0
IntAct (EBI)C9JVI0
FunCoupENSG00000233136
BioGRIDUSP17L11
STRING (EMBL)USP17L11
ZODIACUSP17L11
Ontologies - Pathways
QuickGOC9JVI0
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L11
Atlas of Cancer Signalling NetworkUSP17L11
Wikipedia pathwaysUSP17L11
Orthology - Evolution
OrthoDB100287178
GeneTree (enSembl)ENSG00000233136
Phylogenetic Trees/Animal Genes : TreeFamUSP17L11
HOVERGENC9JVI0
HOGENOMC9JVI0
Homologs : HomoloGeneUSP17L11
Homology/Alignments : Family Browser (UCSC)USP17L11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L11
dbVarUSP17L11
ClinVarUSP17L11
1000_GenomesUSP17L11 
Exome Variant ServerUSP17L11
ExAC (Exome Aggregation Consortium)USP17L11 (select the gene name)
Genetic variants : HAPMAP100287178
Genomic Variants (DGV)USP17L11 [DGVbeta]
DECIPHERUSP17L11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L11 
Mutations
ICGC Data PortalUSP17L11 
TCGA Data PortalUSP17L11 
Broad Tumor PortalUSP17L11
OASIS PortalUSP17L11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L11
DgiDB (Drug Gene Interaction Database)USP17L11
DoCM (Curated mutations)USP17L11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L11 (select a term)
intoGenUSP17L11
Cancer3DUSP17L11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L11
Genetic Testing Registry USP17L11
NextProtC9JVI0 [Medical]
TSGene100287178
GENETestsUSP17L11
Target ValidationUSP17L11
Huge Navigator USP17L11 [HugePedia]
snp3D : Map Gene to Disease100287178
BioCentury BCIQUSP17L11
ClinGenUSP17L11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287178
Chemical/Pharm GKB GenePA166049129
Clinical trialUSP17L11
Miscellaneous
canSAR (ICR)USP17L11 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L11
EVEXUSP17L11
GoPubMedUSP17L11
iHOPUSP17L11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:22 CEST 2017

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