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USP17L12 (ubiquitin specific peptidase 17-like family member 12)

Identity

Other alias-
HGNC (Hugo) USP17L12
LocusID (NCBI) 100287205
Atlas_Id 75526
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9221878 and ends at 9223470 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L12   44440
Cards
Entrez_Gene (NCBI)USP17L12  100287205  ubiquitin specific peptidase 17-like family member 12
Aliases
GeneCards (Weizmann)USP17L12
Ensembl hg19 (Hinxton)ENSG00000227551 [Gene_View]  chr4:9221878-9223470 [Contig_View]  USP17L12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227551 [Gene_View]  chr4:9221878-9223470 [Contig_View]  USP17L12 [Vega]
ICGC DataPortalENSG00000227551
TCGA cBioPortalUSP17L12
AceView (NCBI)USP17L12
Genatlas (Paris)USP17L12
WikiGenes100287205
SOURCE (Princeton)USP17L12
Genetics Home Reference (NIH)USP17L12
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L12  -     chr4:9221878-9223470 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L12  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L12 - 4p16.1 [CytoView hg19]  USP17L12 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L12 [Mapview hg19]  USP17L12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256853
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)USP17L12
Cluster EST : UnigeneHs.741128 [ NCBI ]
CGAP (NCI)Hs.741128
Alternative Splicing GalleryENSG00000227551
Gene ExpressionUSP17L12 [ NCBI-GEO ]   USP17L12 [ EBI - ARRAY_EXPRESS ]   USP17L12 [ SEEK ]   USP17L12 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287205
GTEX Portal (Tissue expression)USP17L12
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JPN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JPN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JPN9
Splice isoforms : SwissVarC9JPN9
PhosPhoSitePlusC9JPN9
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L12
DMDM Disease mutations100287205
Blocks (Seattle)USP17L12
SuperfamilyC9JPN9
Human Protein AtlasENSG00000227551
Peptide AtlasC9JPN9
IPIIPI00935524   
Protein Interaction databases
DIP (DOE-UCLA)C9JPN9
IntAct (EBI)C9JPN9
FunCoupENSG00000227551
BioGRIDUSP17L12
STRING (EMBL)USP17L12
ZODIACUSP17L12
Ontologies - Pathways
QuickGOC9JPN9
Ontology : AmiGOcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
NDEx NetworkUSP17L12
Atlas of Cancer Signalling NetworkUSP17L12
Wikipedia pathwaysUSP17L12
Orthology - Evolution
OrthoDB100287205
GeneTree (enSembl)ENSG00000227551
Phylogenetic Trees/Animal Genes : TreeFamUSP17L12
HOVERGENC9JPN9
HOGENOMC9JPN9
Homologs : HomoloGeneUSP17L12
Homology/Alignments : Family Browser (UCSC)USP17L12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L12
dbVarUSP17L12
ClinVarUSP17L12
1000_GenomesUSP17L12 
Exome Variant ServerUSP17L12
ExAC (Exome Aggregation Consortium)USP17L12 (select the gene name)
Genetic variants : HAPMAP100287205
Genomic Variants (DGV)USP17L12 [DGVbeta]
DECIPHER (Syndromes)4:9221878-9223470  ENSG00000227551
CONAN: Copy Number AnalysisUSP17L12 
Mutations
ICGC Data PortalUSP17L12 
TCGA Data PortalUSP17L12 
Broad Tumor PortalUSP17L12
OASIS PortalUSP17L12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L12
DgiDB (Drug Gene Interaction Database)USP17L12
DoCM (Curated mutations)USP17L12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L12 (select a term)
intoGenUSP17L12
Cancer3DUSP17L12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L12
Genetic Testing Registry USP17L12
NextProtC9JPN9 [Medical]
TSGene100287205
GENETestsUSP17L12
Huge Navigator USP17L12 [HugePedia]
snp3D : Map Gene to Disease100287205
BioCentury BCIQUSP17L12
ClinGenUSP17L12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287205
Clinical trialUSP17L12
Miscellaneous
canSAR (ICR)USP17L12 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L12
EVEXUSP17L12
GoPubMedUSP17L12
iHOPUSP17L12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:58 CET 2017

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