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USP17L13 (ubiquitin specific peptidase 17-like family member 13)

Identity

Other alias-
HGNC (Hugo) USP17L13
LocusID (NCBI) 100287238
Atlas_Id 75527
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9226622 and ends at 9228214 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L13   44441
Cards
Entrez_Gene (NCBI)USP17L13  100287238  ubiquitin specific peptidase 17-like family member 13
Aliases
GeneCards (Weizmann)USP17L13
Ensembl hg19 (Hinxton)ENSG00000232399 [Gene_View]  chr4:9226622-9228214 [Contig_View]  USP17L13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232399 [Gene_View]  chr4:9226622-9228214 [Contig_View]  USP17L13 [Vega]
ICGC DataPortalENSG00000232399
TCGA cBioPortalUSP17L13
AceView (NCBI)USP17L13
Genatlas (Paris)USP17L13
WikiGenes100287238
SOURCE (Princeton)USP17L13
Genetics Home Reference (NIH)USP17L13
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L13  -     chr4:9226622-9228214 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L13  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L13 - 4p16.1 [CytoView hg19]  USP17L13 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L13 [Mapview hg19]  USP17L13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256855
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)USP17L13
Cluster EST : UnigeneHs.741127 [ NCBI ]
CGAP (NCI)Hs.741127
Alternative Splicing GalleryENSG00000232399
Gene ExpressionUSP17L13 [ NCBI-GEO ]   USP17L13 [ EBI - ARRAY_EXPRESS ]   USP17L13 [ SEEK ]   USP17L13 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287238
GTEX Portal (Tissue expression)USP17L13
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JLJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JLJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JLJ4
Splice isoforms : SwissVarC9JLJ4
PhosPhoSitePlusC9JLJ4
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L13
DMDM Disease mutations100287238
Blocks (Seattle)USP17L13
SuperfamilyC9JLJ4
Human Protein AtlasENSG00000232399
Peptide AtlasC9JLJ4
IPIIPI00937832   
Protein Interaction databases
DIP (DOE-UCLA)C9JLJ4
IntAct (EBI)C9JLJ4
FunCoupENSG00000232399
BioGRIDUSP17L13
STRING (EMBL)USP17L13
ZODIACUSP17L13
Ontologies - Pathways
QuickGOC9JLJ4
Ontology : AmiGOcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
NDEx NetworkUSP17L13
Atlas of Cancer Signalling NetworkUSP17L13
Wikipedia pathwaysUSP17L13
Orthology - Evolution
OrthoDB100287238
GeneTree (enSembl)ENSG00000232399
Phylogenetic Trees/Animal Genes : TreeFamUSP17L13
HOVERGENC9JLJ4
HOGENOMC9JLJ4
Homologs : HomoloGeneUSP17L13
Homology/Alignments : Family Browser (UCSC)USP17L13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L13
dbVarUSP17L13
ClinVarUSP17L13
1000_GenomesUSP17L13 
Exome Variant ServerUSP17L13
ExAC (Exome Aggregation Consortium)USP17L13 (select the gene name)
Genetic variants : HAPMAP100287238
Genomic Variants (DGV)USP17L13 [DGVbeta]
DECIPHER (Syndromes)4:9226622-9228214  ENSG00000232399
CONAN: Copy Number AnalysisUSP17L13 
Mutations
ICGC Data PortalUSP17L13 
TCGA Data PortalUSP17L13 
Broad Tumor PortalUSP17L13
OASIS PortalUSP17L13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP17L13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L13
DgiDB (Drug Gene Interaction Database)USP17L13
DoCM (Curated mutations)USP17L13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L13 (select a term)
intoGenUSP17L13
Cancer3DUSP17L13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L13
Genetic Testing Registry USP17L13
NextProtC9JLJ4 [Medical]
TSGene100287238
GENETestsUSP17L13
Huge Navigator USP17L13 [HugePedia]
snp3D : Map Gene to Disease100287238
BioCentury BCIQUSP17L13
ClinGenUSP17L13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287238
Clinical trialUSP17L13
Miscellaneous
canSAR (ICR)USP17L13 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L13
EVEXUSP17L13
GoPubMedUSP17L13
iHOPUSP17L13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:58 CET 2017

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