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USP17L15 (ubiquitin specific peptidase 17-like family member 15)

Identity

Other alias-
HGNC (Hugo) USP17L15
LocusID (NCBI) 100288520
Atlas_Id 75528
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9236111 and ends at 9238060 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L15   44443
Cards
Entrez_Gene (NCBI)USP17L15  100288520  ubiquitin specific peptidase 17-like family member 15
Aliases
GeneCards (Weizmann)USP17L15
Ensembl hg19 (Hinxton)ENSG00000223569 [Gene_View]  chr4:9236111-9238060 [Contig_View]  USP17L15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000223569 [Gene_View]  chr4:9236111-9238060 [Contig_View]  USP17L15 [Vega]
ICGC DataPortalENSG00000223569
TCGA cBioPortalUSP17L15
AceView (NCBI)USP17L15
Genatlas (Paris)USP17L15
WikiGenes100288520
SOURCE (Princeton)USP17L15
Genetics Home Reference (NIH)USP17L15
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L15  -     chr4:9236111-9238060 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L15  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L15 - 4p16.1 [CytoView hg19]  USP17L15 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L15 [Mapview hg19]  USP17L15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256894
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)USP17L15
Cluster EST : UnigeneHs.528621 [ NCBI ]
CGAP (NCI)Hs.528621
Alternative Splicing GalleryENSG00000223569
Gene ExpressionUSP17L15 [ NCBI-GEO ]   USP17L15 [ EBI - ARRAY_EXPRESS ]   USP17L15 [ SEEK ]   USP17L15 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288520
GTEX Portal (Tissue expression)USP17L15
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J2P7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J2P7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J2P7
Splice isoforms : SwissVarC9J2P7
PhosPhoSitePlusC9J2P7
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L15
DMDM Disease mutations100288520
Blocks (Seattle)USP17L15
SuperfamilyC9J2P7
Human Protein AtlasENSG00000223569
Peptide AtlasC9J2P7
IPIIPI00937986   
Protein Interaction databases
DIP (DOE-UCLA)C9J2P7
IntAct (EBI)C9J2P7
FunCoupENSG00000223569
BioGRIDUSP17L15
STRING (EMBL)USP17L15
ZODIACUSP17L15
Ontologies - Pathways
QuickGOC9J2P7
Ontology : AmiGOcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
NDEx NetworkUSP17L15
Atlas of Cancer Signalling NetworkUSP17L15
Wikipedia pathwaysUSP17L15
Orthology - Evolution
OrthoDB100288520
GeneTree (enSembl)ENSG00000223569
Phylogenetic Trees/Animal Genes : TreeFamUSP17L15
HOVERGENC9J2P7
HOGENOMC9J2P7
Homologs : HomoloGeneUSP17L15
Homology/Alignments : Family Browser (UCSC)USP17L15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L15
dbVarUSP17L15
ClinVarUSP17L15
1000_GenomesUSP17L15 
Exome Variant ServerUSP17L15
ExAC (Exome Aggregation Consortium)USP17L15 (select the gene name)
Genetic variants : HAPMAP100288520
Genomic Variants (DGV)USP17L15 [DGVbeta]
DECIPHER (Syndromes)4:9236111-9238060  ENSG00000223569
CONAN: Copy Number AnalysisUSP17L15 
Mutations
ICGC Data PortalUSP17L15 
TCGA Data PortalUSP17L15 
Broad Tumor PortalUSP17L15
OASIS PortalUSP17L15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L15
DgiDB (Drug Gene Interaction Database)USP17L15
DoCM (Curated mutations)USP17L15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L15 (select a term)
intoGenUSP17L15
Cancer3DUSP17L15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L15
Genetic Testing Registry USP17L15
NextProtC9J2P7 [Medical]
TSGene100288520
GENETestsUSP17L15
Huge Navigator USP17L15 [HugePedia]
snp3D : Map Gene to Disease100288520
BioCentury BCIQUSP17L15
ClinGenUSP17L15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288520
Clinical trialUSP17L15
Miscellaneous
canSAR (ICR)USP17L15 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L15
EVEXUSP17L15
GoPubMedUSP17L15
iHOPUSP17L15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:58 CET 2017

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