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USP17L17 (ubiquitin specific peptidase 17-like family member 17)

Identity

Other alias-
HGNC (Hugo) USP17L17
LocusID (NCBI) 100287327
Atlas_Id 75529
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9245605 and ends at 9247197 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L17   44445
Cards
Entrez_Gene (NCBI)USP17L17  100287327  ubiquitin specific peptidase 17-like family member 17
Aliases
GeneCards (Weizmann)USP17L17
Ensembl hg19 (Hinxton)ENSG00000249104 [Gene_View]  chr4:9245605-9247197 [Contig_View]  USP17L17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000249104 [Gene_View]  chr4:9245605-9247197 [Contig_View]  USP17L17 [Vega]
ICGC DataPortalENSG00000249104
TCGA cBioPortalUSP17L17
AceView (NCBI)USP17L17
Genatlas (Paris)USP17L17
WikiGenes100287327
SOURCE (Princeton)USP17L17
Genetics Home Reference (NIH)USP17L17
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L17  -     chr4:9245605-9247197 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L17  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L17 - 4p16.1 [CytoView hg19]  USP17L17 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L17 [Mapview hg19]  USP17L17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256857
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)USP17L17
Cluster EST : UnigeneHs.741129 [ NCBI ]
CGAP (NCI)Hs.741129
Alternative Splicing GalleryENSG00000249104
Gene ExpressionUSP17L17 [ NCBI-GEO ]   USP17L17 [ EBI - ARRAY_EXPRESS ]   USP17L17 [ SEEK ]   USP17L17 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287327
GTEX Portal (Tissue expression)USP17L17
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6RBQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6RBQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6RBQ6
Splice isoforms : SwissVarD6RBQ6
PhosPhoSitePlusD6RBQ6
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L17
DMDM Disease mutations100287327
Blocks (Seattle)USP17L17
SuperfamilyD6RBQ6
Human Protein AtlasENSG00000249104
Peptide AtlasD6RBQ6
IPIIPI00937633   
Protein Interaction databases
DIP (DOE-UCLA)D6RBQ6
IntAct (EBI)D6RBQ6
FunCoupENSG00000249104
BioGRIDUSP17L17
STRING (EMBL)USP17L17
ZODIACUSP17L17
Ontologies - Pathways
QuickGOD6RBQ6
Ontology : AmiGOcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
NDEx NetworkUSP17L17
Atlas of Cancer Signalling NetworkUSP17L17
Wikipedia pathwaysUSP17L17
Orthology - Evolution
OrthoDB100287327
GeneTree (enSembl)ENSG00000249104
Phylogenetic Trees/Animal Genes : TreeFamUSP17L17
HOVERGEND6RBQ6
HOGENOMD6RBQ6
Homologs : HomoloGeneUSP17L17
Homology/Alignments : Family Browser (UCSC)USP17L17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L17
dbVarUSP17L17
ClinVarUSP17L17
1000_GenomesUSP17L17 
Exome Variant ServerUSP17L17
ExAC (Exome Aggregation Consortium)USP17L17 (select the gene name)
Genetic variants : HAPMAP100287327
Genomic Variants (DGV)USP17L17 [DGVbeta]
DECIPHER (Syndromes)4:9245605-9247197  ENSG00000249104
CONAN: Copy Number AnalysisUSP17L17 
Mutations
ICGC Data PortalUSP17L17 
TCGA Data PortalUSP17L17 
Broad Tumor PortalUSP17L17
OASIS PortalUSP17L17 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L17
DgiDB (Drug Gene Interaction Database)USP17L17
DoCM (Curated mutations)USP17L17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L17 (select a term)
intoGenUSP17L17
Cancer3DUSP17L17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L17
Genetic Testing Registry USP17L17
NextProtD6RBQ6 [Medical]
TSGene100287327
GENETestsUSP17L17
Huge Navigator USP17L17 [HugePedia]
snp3D : Map Gene to Disease100287327
BioCentury BCIQUSP17L17
ClinGenUSP17L17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287327
Clinical trialUSP17L17
Miscellaneous
canSAR (ICR)USP17L17 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L17
EVEXUSP17L17
GoPubMedUSP17L17
iHOPUSP17L17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:58 CET 2017

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