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USP17L18 (ubiquitin specific peptidase 17-like family member 18)

Identity

Other alias-
HGNC (Hugo) USP17L18
LocusID (NCBI) 100287364
Atlas_Id 75530
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9215405 and ends at 9216997 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L18   44446
Cards
Entrez_Gene (NCBI)USP17L18  100287364  ubiquitin specific peptidase 17-like family member 18
Aliases
GeneCards (Weizmann)USP17L18
Ensembl hg19 (Hinxton)ENSG00000250844 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250844 [Gene_View]  chr4:9215405-9216997 [Contig_View]  USP17L18 [Vega]
ICGC DataPortalENSG00000250844
TCGA cBioPortalUSP17L18
AceView (NCBI)USP17L18
Genatlas (Paris)USP17L18
WikiGenes100287364
SOURCE (Princeton)USP17L18
Genetics Home Reference (NIH)USP17L18
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L18  -     chr4:9215405-9216997 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L18  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L18 - 4p16.1 [CytoView hg19]  USP17L18 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L18 [Mapview hg19]  USP17L18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L18
Cluster EST : UnigeneHs.741138 [ NCBI ]
CGAP (NCI)Hs.741138
Alternative Splicing GalleryENSG00000250844
Gene ExpressionUSP17L18 [ NCBI-GEO ]   USP17L18 [ EBI - ARRAY_EXPRESS ]   USP17L18 [ SEEK ]   USP17L18 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287364
GTEX Portal (Tissue expression)USP17L18
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6R9N7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6R9N7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6R9N7
Splice isoforms : SwissVarD6R9N7
PhosPhoSitePlusD6R9N7
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L18
DMDM Disease mutations100287364
Blocks (Seattle)USP17L18
SuperfamilyD6R9N7
Human Protein AtlasENSG00000250844
Peptide AtlasD6R9N7
IPIIPI00937459   
Protein Interaction databases
DIP (DOE-UCLA)D6R9N7
IntAct (EBI)D6R9N7
FunCoupENSG00000250844
BioGRIDUSP17L18
STRING (EMBL)USP17L18
ZODIACUSP17L18
Ontologies - Pathways
QuickGOD6R9N7
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L18
Atlas of Cancer Signalling NetworkUSP17L18
Wikipedia pathwaysUSP17L18
Orthology - Evolution
OrthoDB100287364
GeneTree (enSembl)ENSG00000250844
Phylogenetic Trees/Animal Genes : TreeFamUSP17L18
HOVERGEND6R9N7
HOGENOMD6R9N7
Homologs : HomoloGeneUSP17L18
Homology/Alignments : Family Browser (UCSC)USP17L18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L18
dbVarUSP17L18
ClinVarUSP17L18
1000_GenomesUSP17L18 
Exome Variant ServerUSP17L18
ExAC (Exome Aggregation Consortium)USP17L18 (select the gene name)
Genetic variants : HAPMAP100287364
Genomic Variants (DGV)USP17L18 [DGVbeta]
DECIPHERUSP17L18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L18 
Mutations
ICGC Data PortalUSP17L18 
TCGA Data PortalUSP17L18 
Broad Tumor PortalUSP17L18
OASIS PortalUSP17L18 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L18
DgiDB (Drug Gene Interaction Database)USP17L18
DoCM (Curated mutations)USP17L18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L18 (select a term)
intoGenUSP17L18
Cancer3DUSP17L18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L18
Genetic Testing Registry USP17L18
NextProtD6R9N7 [Medical]
TSGene100287364
GENETestsUSP17L18
Huge Navigator USP17L18 [HugePedia]
snp3D : Map Gene to Disease100287364
BioCentury BCIQUSP17L18
ClinGenUSP17L18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287364
Chemical/Pharm GKB GenePA166049134
Clinical trialUSP17L18
Miscellaneous
canSAR (ICR)USP17L18 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L18
EVEXUSP17L18
GoPubMedUSP17L18
iHOPUSP17L18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:00:54 CEST 2017

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