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USP17L19 (ubiquitin specific peptidase 17-like family member 19)

Identity

Other alias-
HGNC (Hugo) USP17L19
LocusID (NCBI) 100287404
Atlas_Id 75531
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9253378 and ends at 9254970 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L19   44447
Cards
Entrez_Gene (NCBI)USP17L19  100287404  ubiquitin specific peptidase 17-like family member 19
Aliases
GeneCards (Weizmann)USP17L19
Ensembl hg19 (Hinxton)ENSG00000248920 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248920 [Gene_View]  chr4:9253378-9254970 [Contig_View]  USP17L19 [Vega]
ICGC DataPortalENSG00000248920
TCGA cBioPortalUSP17L19
AceView (NCBI)USP17L19
Genatlas (Paris)USP17L19
WikiGenes100287404
SOURCE (Princeton)USP17L19
Genetics Home Reference (NIH)USP17L19
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L19  -     chr4:9253378-9254970 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L19  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L19 - 4p16.1 [CytoView hg19]  USP17L19 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L19 [Mapview hg19]  USP17L19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L19
Cluster EST : UnigeneHs.741137 [ NCBI ]
CGAP (NCI)Hs.741137
Alternative Splicing GalleryENSG00000248920
Gene ExpressionUSP17L19 [ NCBI-GEO ]   USP17L19 [ EBI - ARRAY_EXPRESS ]   USP17L19 [ SEEK ]   USP17L19 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287404
GTEX Portal (Tissue expression)USP17L19
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6RCP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6RCP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6RCP7
Splice isoforms : SwissVarD6RCP7
PhosPhoSitePlusD6RCP7
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L19
DMDM Disease mutations100287404
Blocks (Seattle)USP17L19
SuperfamilyD6RCP7
Human Protein AtlasENSG00000248920
Peptide AtlasD6RCP7
IPIIPI00937246   
Protein Interaction databases
DIP (DOE-UCLA)D6RCP7
IntAct (EBI)D6RCP7
FunCoupENSG00000248920
BioGRIDUSP17L19
STRING (EMBL)USP17L19
ZODIACUSP17L19
Ontologies - Pathways
QuickGOD6RCP7
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L19
Atlas of Cancer Signalling NetworkUSP17L19
Wikipedia pathwaysUSP17L19
Orthology - Evolution
OrthoDB100287404
GeneTree (enSembl)ENSG00000248920
Phylogenetic Trees/Animal Genes : TreeFamUSP17L19
HOVERGEND6RCP7
HOGENOMD6RCP7
Homologs : HomoloGeneUSP17L19
Homology/Alignments : Family Browser (UCSC)USP17L19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L19
dbVarUSP17L19
ClinVarUSP17L19
1000_GenomesUSP17L19 
Exome Variant ServerUSP17L19
ExAC (Exome Aggregation Consortium)USP17L19 (select the gene name)
Genetic variants : HAPMAP100287404
Genomic Variants (DGV)USP17L19 [DGVbeta]
DECIPHERUSP17L19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L19 
Mutations
ICGC Data PortalUSP17L19 
TCGA Data PortalUSP17L19 
Broad Tumor PortalUSP17L19
OASIS PortalUSP17L19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L19
DgiDB (Drug Gene Interaction Database)USP17L19
DoCM (Curated mutations)USP17L19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L19 (select a term)
intoGenUSP17L19
Cancer3DUSP17L19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L19
Genetic Testing Registry USP17L19
NextProtD6RCP7 [Medical]
TSGene100287404
GENETestsUSP17L19
Target ValidationUSP17L19
Huge Navigator USP17L19 [HugePedia]
snp3D : Map Gene to Disease100287404
BioCentury BCIQUSP17L19
ClinGenUSP17L19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287404
Chemical/Pharm GKB GenePA166049135
Clinical trialUSP17L19
Miscellaneous
canSAR (ICR)USP17L19 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L19
EVEXUSP17L19
GoPubMedUSP17L19
iHOPUSP17L19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:23 CEST 2017

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