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USP17L20 (ubiquitin specific peptidase 17-like family member 20)

Identity

Other alias-
HGNC (Hugo) USP17L20
LocusID (NCBI) 100287441
Atlas_Id 75532
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9217131 and ends at 9218723 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L20   44448
Cards
Entrez_Gene (NCBI)USP17L20  100287441  ubiquitin specific peptidase 17-like family member 20
Aliases
GeneCards (Weizmann)USP17L20
Ensembl hg19 (Hinxton)ENSG00000250745 [Gene_View]  chr4:9217131-9218723 [Contig_View]  USP17L20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000250745 [Gene_View]  chr4:9217131-9218723 [Contig_View]  USP17L20 [Vega]
ICGC DataPortalENSG00000250745
TCGA cBioPortalUSP17L20
AceView (NCBI)USP17L20
Genatlas (Paris)USP17L20
WikiGenes100287441
SOURCE (Princeton)USP17L20
Genetics Home Reference (NIH)USP17L20
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L20  -     chr4:9217131-9218723 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L20  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L20 - 4p16.1 [CytoView hg19]  USP17L20 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L20 [Mapview hg19]  USP17L20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY188990
RefSeq transcript (Entrez)NM_001256861
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)USP17L20
Cluster EST : UnigeneHs.741133 [ NCBI ]
CGAP (NCI)Hs.741133
Alternative Splicing GalleryENSG00000250745
Gene ExpressionUSP17L20 [ NCBI-GEO ]   USP17L20 [ EBI - ARRAY_EXPRESS ]   USP17L20 [ SEEK ]   USP17L20 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287441
GTEX Portal (Tissue expression)USP17L20
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6RJB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6RJB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6RJB6
Splice isoforms : SwissVarD6RJB6
PhosPhoSitePlusD6RJB6
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L20
DMDM Disease mutations100287441
Blocks (Seattle)USP17L20
SuperfamilyD6RJB6
Human Protein AtlasENSG00000250745
Peptide AtlasD6RJB6
IPIIPI00967528   
Protein Interaction databases
DIP (DOE-UCLA)D6RJB6
IntAct (EBI)D6RJB6
FunCoupENSG00000250745
BioGRIDUSP17L20
STRING (EMBL)USP17L20
ZODIACUSP17L20
Ontologies - Pathways
QuickGOD6RJB6
Ontology : AmiGOcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  protein deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
NDEx NetworkUSP17L20
Atlas of Cancer Signalling NetworkUSP17L20
Wikipedia pathwaysUSP17L20
Orthology - Evolution
OrthoDB100287441
GeneTree (enSembl)ENSG00000250745
Phylogenetic Trees/Animal Genes : TreeFamUSP17L20
HOVERGEND6RJB6
HOGENOMD6RJB6
Homologs : HomoloGeneUSP17L20
Homology/Alignments : Family Browser (UCSC)USP17L20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L20
dbVarUSP17L20
ClinVarUSP17L20
1000_GenomesUSP17L20 
Exome Variant ServerUSP17L20
ExAC (Exome Aggregation Consortium)USP17L20 (select the gene name)
Genetic variants : HAPMAP100287441
Genomic Variants (DGV)USP17L20 [DGVbeta]
DECIPHER (Syndromes)4:9217131-9218723  ENSG00000250745
CONAN: Copy Number AnalysisUSP17L20 
Mutations
ICGC Data PortalUSP17L20 
TCGA Data PortalUSP17L20 
Broad Tumor PortalUSP17L20
OASIS PortalUSP17L20 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L20
DgiDB (Drug Gene Interaction Database)USP17L20
DoCM (Curated mutations)USP17L20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L20 (select a term)
intoGenUSP17L20
Cancer3DUSP17L20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L20
Genetic Testing Registry USP17L20
NextProtD6RJB6 [Medical]
TSGene100287441
GENETestsUSP17L20
Huge Navigator USP17L20 [HugePedia]
snp3D : Map Gene to Disease100287441
BioCentury BCIQUSP17L20
ClinGenUSP17L20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287441
Clinical trialUSP17L20
Miscellaneous
canSAR (ICR)USP17L20 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L20
EVEXUSP17L20
GoPubMedUSP17L20
iHOPUSP17L20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:59 CET 2017

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