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USP17L21 (ubiquitin specific peptidase 17-like family member 21)

Identity

Other alias-
HGNC (Hugo) USP17L21
LocusID (NCBI) 100287478
Atlas_Id 75533
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9220152 and ends at 9221744 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L21   44449
Cards
Entrez_Gene (NCBI)USP17L21  100287478  ubiquitin specific peptidase 17-like family member 21
Aliases
GeneCards (Weizmann)USP17L21
Ensembl hg19 (Hinxton)ENSG00000249811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249811 [Gene_View]  chr4:9220152-9221744 [Contig_View]  USP17L21 [Vega]
ICGC DataPortalENSG00000249811
TCGA cBioPortalUSP17L21
AceView (NCBI)USP17L21
Genatlas (Paris)USP17L21
WikiGenes100287478
SOURCE (Princeton)USP17L21
Genetics Home Reference (NIH)USP17L21
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L21  -     chr4:9220152-9221744 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L21  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L21 - 4p16.1 [CytoView hg19]  USP17L21 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L21 [Mapview hg19]  USP17L21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256862
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L21
Cluster EST : UnigeneHs.741136 [ NCBI ]
CGAP (NCI)Hs.741136
Alternative Splicing GalleryENSG00000249811
Gene ExpressionUSP17L21 [ NCBI-GEO ]   USP17L21 [ EBI - ARRAY_EXPRESS ]   USP17L21 [ SEEK ]   USP17L21 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287478
GTEX Portal (Tissue expression)USP17L21
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6R901   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6R901  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6R901
Splice isoforms : SwissVarD6R901
PhosPhoSitePlusD6R901
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L21
DMDM Disease mutations100287478
Blocks (Seattle)USP17L21
SuperfamilyD6R901
Human Protein AtlasENSG00000249811
Peptide AtlasD6R901
IPIIPI00936851   
Protein Interaction databases
DIP (DOE-UCLA)D6R901
IntAct (EBI)D6R901
FunCoupENSG00000249811
BioGRIDUSP17L21
STRING (EMBL)USP17L21
ZODIACUSP17L21
Ontologies - Pathways
QuickGOD6R901
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L21
Atlas of Cancer Signalling NetworkUSP17L21
Wikipedia pathwaysUSP17L21
Orthology - Evolution
OrthoDB100287478
GeneTree (enSembl)ENSG00000249811
Phylogenetic Trees/Animal Genes : TreeFamUSP17L21
HOVERGEND6R901
HOGENOMD6R901
Homologs : HomoloGeneUSP17L21
Homology/Alignments : Family Browser (UCSC)USP17L21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L21
dbVarUSP17L21
ClinVarUSP17L21
1000_GenomesUSP17L21 
Exome Variant ServerUSP17L21
ExAC (Exome Aggregation Consortium)USP17L21 (select the gene name)
Genetic variants : HAPMAP100287478
Genomic Variants (DGV)USP17L21 [DGVbeta]
DECIPHERUSP17L21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L21 
Mutations
ICGC Data PortalUSP17L21 
TCGA Data PortalUSP17L21 
Broad Tumor PortalUSP17L21
OASIS PortalUSP17L21 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L21
DgiDB (Drug Gene Interaction Database)USP17L21
DoCM (Curated mutations)USP17L21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L21 (select a term)
intoGenUSP17L21
Cancer3DUSP17L21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L21
Genetic Testing Registry USP17L21
NextProtD6R901 [Medical]
TSGene100287478
GENETestsUSP17L21
Target ValidationUSP17L21
Huge Navigator USP17L21 [HugePedia]
snp3D : Map Gene to Disease100287478
BioCentury BCIQUSP17L21
ClinGenUSP17L21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287478
Chemical/Pharm GKB GenePA166049137
Clinical trialUSP17L21
Miscellaneous
canSAR (ICR)USP17L21 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L21
EVEXUSP17L21
GoPubMedUSP17L21
iHOPUSP17L21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:21 CEST 2017

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