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USP17L22 (ubiquitin specific peptidase 17-like family member 22)

Identity

Other alias-
HGNC (Hugo) USP17L22
LocusID (NCBI) 100287513
Atlas_Id 75534
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9258124 and ends at 9259716 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L22   44450
Cards
Entrez_Gene (NCBI)USP17L22  100287513  ubiquitin specific peptidase 17-like family member 22
Aliases
GeneCards (Weizmann)USP17L22
Ensembl hg19 (Hinxton)ENSG00000248933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248933 [Gene_View]  chr4:9258124-9259716 [Contig_View]  USP17L22 [Vega]
ICGC DataPortalENSG00000248933
TCGA cBioPortalUSP17L22
AceView (NCBI)USP17L22
Genatlas (Paris)USP17L22
WikiGenes100287513
SOURCE (Princeton)USP17L22
Genetics Home Reference (NIH)USP17L22
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L22  -     chr4:9258124-9259716 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L22  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L22 - 4p16.1 [CytoView hg19]  USP17L22 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L22 [Mapview hg19]  USP17L22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L22
Cluster EST : UnigeneHs.723053 [ NCBI ]
CGAP (NCI)Hs.723053
Alternative Splicing GalleryENSG00000248933
Gene ExpressionUSP17L22 [ NCBI-GEO ]   USP17L22 [ EBI - ARRAY_EXPRESS ]   USP17L22 [ SEEK ]   USP17L22 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287513
GTEX Portal (Tissue expression)USP17L22
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6RA61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6RA61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6RA61
Splice isoforms : SwissVarD6RA61
PhosPhoSitePlusD6RA61
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L22
DMDM Disease mutations100287513
Blocks (Seattle)USP17L22
SuperfamilyD6RA61
Human Protein AtlasENSG00000248933
Peptide AtlasD6RA61
IPIIPI00936680   
Protein Interaction databases
DIP (DOE-UCLA)D6RA61
IntAct (EBI)D6RA61
FunCoupENSG00000248933
BioGRIDUSP17L22
STRING (EMBL)USP17L22
ZODIACUSP17L22
Ontologies - Pathways
QuickGOD6RA61
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L22
Atlas of Cancer Signalling NetworkUSP17L22
Wikipedia pathwaysUSP17L22
Orthology - Evolution
OrthoDB100287513
GeneTree (enSembl)ENSG00000248933
Phylogenetic Trees/Animal Genes : TreeFamUSP17L22
HOVERGEND6RA61
HOGENOMD6RA61
Homologs : HomoloGeneUSP17L22
Homology/Alignments : Family Browser (UCSC)USP17L22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L22
dbVarUSP17L22
ClinVarUSP17L22
1000_GenomesUSP17L22 
Exome Variant ServerUSP17L22
ExAC (Exome Aggregation Consortium)USP17L22 (select the gene name)
Genetic variants : HAPMAP100287513
Genomic Variants (DGV)USP17L22 [DGVbeta]
DECIPHERUSP17L22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L22 
Mutations
ICGC Data PortalUSP17L22 
TCGA Data PortalUSP17L22 
Broad Tumor PortalUSP17L22
OASIS PortalUSP17L22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L22
DgiDB (Drug Gene Interaction Database)USP17L22
DoCM (Curated mutations)USP17L22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L22 (select a term)
intoGenUSP17L22
Cancer3DUSP17L22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L22
Genetic Testing Registry USP17L22
NextProtD6RA61 [Medical]
TSGene100287513
GENETestsUSP17L22
Target ValidationUSP17L22
Huge Navigator USP17L22 [HugePedia]
snp3D : Map Gene to Disease100287513
BioCentury BCIQUSP17L22
ClinGenUSP17L22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287513
Chemical/Pharm GKB GenePA166049138
Clinical trialUSP17L22
Miscellaneous
canSAR (ICR)USP17L22 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L22
EVEXUSP17L22
GoPubMedUSP17L22
iHOPUSP17L22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:22 CEST 2017

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