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USP17L25 (ubiquitin specific peptidase 17-like family member 25)

Identity

Other alias-
HGNC (Hugo) USP17L25
LocusID (NCBI) 728373
Atlas_Id 75536
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9325165 and ends at 9326757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L25   44452
Cards
Entrez_Gene (NCBI)USP17L25  728373  ubiquitin specific peptidase 17-like family member 25
Aliases
GeneCards (Weizmann)USP17L25
Ensembl hg19 (Hinxton)ENSG00000230430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230430 [Gene_View]  chr4:9325165-9326757 [Contig_View]  USP17L25 [Vega]
ICGC DataPortalENSG00000230430
TCGA cBioPortalUSP17L25
AceView (NCBI)USP17L25
Genatlas (Paris)USP17L25
WikiGenes728373
SOURCE (Princeton)USP17L25
Genetics Home Reference (NIH)USP17L25
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L25  -     chr4:9325165-9326757 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L25  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L25 - 4p16.1 [CytoView hg19]  USP17L25 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L25 [Mapview hg19]  USP17L25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L25
Cluster EST : UnigeneHs.553810 [ NCBI ]
CGAP (NCI)Hs.553810
Alternative Splicing GalleryENSG00000230430
Gene ExpressionUSP17L25 [ NCBI-GEO ]   USP17L25 [ EBI - ARRAY_EXPRESS ]   USP17L25 [ SEEK ]   USP17L25 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728373
GTEX Portal (Tissue expression)USP17L25
Human Protein AtlasENSG00000230430-USP17L25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L25
DMDM Disease mutations728373
Blocks (Seattle)USP17L25
SuperfamilyQ0WX57
Human Protein Atlas [tissue]ENSG00000230430-USP17L25 [tissue]
Peptide AtlasQ0WX57
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000230430
BioGRIDUSP17L25
STRING (EMBL)USP17L25
ZODIACUSP17L25
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUSP17L25
Atlas of Cancer Signalling NetworkUSP17L25
Wikipedia pathwaysUSP17L25
Orthology - Evolution
OrthoDB728373
GeneTree (enSembl)ENSG00000230430
Phylogenetic Trees/Animal Genes : TreeFamUSP17L25
HOVERGENQ0WX57
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L25
Homology/Alignments : Family Browser (UCSC)USP17L25
Gene fusions - Rearrangements
Fusion: Tumor Portal USP17L25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L25
dbVarUSP17L25
ClinVarUSP17L25
1000_GenomesUSP17L25 
Exome Variant ServerUSP17L25
ExAC (Exome Aggregation Consortium)ENSG00000230430
GNOMAD BrowserENSG00000230430
Genetic variants : HAPMAP728373
Genomic Variants (DGV)USP17L25 [DGVbeta]
DECIPHERUSP17L25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L25 
Mutations
ICGC Data PortalUSP17L25 
TCGA Data PortalUSP17L25 
Broad Tumor PortalUSP17L25
OASIS PortalUSP17L25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP17L25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L25
DgiDB (Drug Gene Interaction Database)USP17L25
DoCM (Curated mutations)USP17L25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L25 (select a term)
intoGenUSP17L25
Cancer3DUSP17L25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L25
Genetic Testing Registry USP17L25
NextProtQ0WX57 [Medical]
TSGene728373
GENETestsUSP17L25
Target ValidationUSP17L25
Huge Navigator USP17L25 [HugePedia]
snp3D : Map Gene to Disease728373
BioCentury BCIQUSP17L25
ClinGenUSP17L25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728373
Chemical/Pharm GKB GenePA166049140
Clinical trialUSP17L25
Miscellaneous
canSAR (ICR)USP17L25 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L25
EVEXUSP17L25
GoPubMedUSP17L25
iHOPUSP17L25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:11 CET 2017

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