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USP17L27 (ubiquitin specific peptidase 17-like family member 27)

Identity

Other alias-
HGNC (Hugo) USP17L27
LocusID (NCBI) 728393
Atlas_Id 75538
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9325165 and ends at 9326757 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L27   44455
Cards
Entrez_Gene (NCBI)USP17L27  728393  ubiquitin specific peptidase 17-like family member 27
Aliases
GeneCards (Weizmann)USP17L27
Ensembl hg19 (Hinxton)ENSG00000235780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235780 [Gene_View]  chr4:9325165-9326757 [Contig_View]  USP17L27 [Vega]
ICGC DataPortalENSG00000235780
TCGA cBioPortalUSP17L27
AceView (NCBI)USP17L27
Genatlas (Paris)USP17L27
WikiGenes728393
SOURCE (Princeton)USP17L27
Genetics Home Reference (NIH)USP17L27
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L27  -     chr4:9325165-9326757 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L27  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L27 - 4p16.1 [CytoView hg19]  USP17L27 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L27 [Mapview hg19]  USP17L27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L27
Cluster EST : UnigeneHs.553810 [ NCBI ]
CGAP (NCI)Hs.553810
Alternative Splicing GalleryENSG00000235780
Gene ExpressionUSP17L27 [ NCBI-GEO ]   USP17L27 [ EBI - ARRAY_EXPRESS ]   USP17L27 [ SEEK ]   USP17L27 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728393
GTEX Portal (Tissue expression)USP17L27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L27
DMDM Disease mutations728393
Blocks (Seattle)USP17L27
SuperfamilyQ0WX57
Human Protein AtlasENSG00000235780
Peptide AtlasQ0WX57
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000235780
BioGRIDUSP17L27
STRING (EMBL)USP17L27
ZODIACUSP17L27
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUSP17L27
Atlas of Cancer Signalling NetworkUSP17L27
Wikipedia pathwaysUSP17L27
Orthology - Evolution
OrthoDB728393
GeneTree (enSembl)ENSG00000235780
Phylogenetic Trees/Animal Genes : TreeFamUSP17L27
HOVERGENQ0WX57
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L27
Homology/Alignments : Family Browser (UCSC)USP17L27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L27
dbVarUSP17L27
ClinVarUSP17L27
1000_GenomesUSP17L27 
Exome Variant ServerUSP17L27
ExAC (Exome Aggregation Consortium)USP17L27 (select the gene name)
Genetic variants : HAPMAP728393
Genomic Variants (DGV)USP17L27 [DGVbeta]
DECIPHERUSP17L27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L27 
Mutations
ICGC Data PortalUSP17L27 
TCGA Data PortalUSP17L27 
Broad Tumor PortalUSP17L27
OASIS PortalUSP17L27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP17L27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L27
DgiDB (Drug Gene Interaction Database)USP17L27
DoCM (Curated mutations)USP17L27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L27 (select a term)
intoGenUSP17L27
Cancer3DUSP17L27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L27
Genetic Testing Registry USP17L27
NextProtQ0WX57 [Medical]
TSGene728393
GENETestsUSP17L27
Target ValidationUSP17L27
Huge Navigator USP17L27 [HugePedia]
snp3D : Map Gene to Disease728393
BioCentury BCIQUSP17L27
ClinGenUSP17L27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728393
Chemical/Pharm GKB GenePA166049143
Clinical trialUSP17L27
Miscellaneous
canSAR (ICR)USP17L27 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L27
EVEXUSP17L27
GoPubMedUSP17L27
iHOPUSP17L27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:24 CEST 2017

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