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USP17L28 (ubiquitin specific peptidase 17-like family member 28)

Identity

Other alias-
HGNC (Hugo) USP17L28
LocusID (NCBI) 728400
Atlas_Id 75539
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9325165 and ends at 9326757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L28   44456
Cards
Entrez_Gene (NCBI)USP17L28  728400  ubiquitin specific peptidase 17-like family member 28
Aliases
GeneCards (Weizmann)USP17L28
Ensembl hg19 (Hinxton)ENSG00000231051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231051 [Gene_View]  chr4:9325165-9326757 [Contig_View]  USP17L28 [Vega]
ICGC DataPortalENSG00000231051
TCGA cBioPortalUSP17L28
AceView (NCBI)USP17L28
Genatlas (Paris)USP17L28
WikiGenes728400
SOURCE (Princeton)USP17L28
Genetics Home Reference (NIH)USP17L28
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L28  -     chr4:9325165-9326757 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L28  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L28 - 4p16.1 [CytoView hg19]  USP17L28 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L28 [Mapview hg19]  USP17L28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L28
Cluster EST : UnigeneHs.553810 [ NCBI ]
CGAP (NCI)Hs.553810
Alternative Splicing GalleryENSG00000231051
Gene ExpressionUSP17L28 [ NCBI-GEO ]   USP17L28 [ EBI - ARRAY_EXPRESS ]   USP17L28 [ SEEK ]   USP17L28 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728400
GTEX Portal (Tissue expression)USP17L28
Human Protein AtlasENSG00000231051-USP17L28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L28
DMDM Disease mutations728400
Blocks (Seattle)USP17L28
SuperfamilyQ0WX57
Human Protein Atlas [tissue]ENSG00000231051-USP17L28 [tissue]
Peptide AtlasQ0WX57
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000231051
BioGRIDUSP17L28
STRING (EMBL)USP17L28
ZODIACUSP17L28
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUSP17L28
Atlas of Cancer Signalling NetworkUSP17L28
Wikipedia pathwaysUSP17L28
Orthology - Evolution
OrthoDB728400
GeneTree (enSembl)ENSG00000231051
Phylogenetic Trees/Animal Genes : TreeFamUSP17L28
HOVERGENQ0WX57
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L28
Homology/Alignments : Family Browser (UCSC)USP17L28
Gene fusions - Rearrangements
Tumor Fusion PortalUSP17L28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L28
dbVarUSP17L28
ClinVarUSP17L28
1000_GenomesUSP17L28 
Exome Variant ServerUSP17L28
ExAC (Exome Aggregation Consortium)ENSG00000231051
GNOMAD BrowserENSG00000231051
Genetic variants : HAPMAP728400
Genomic Variants (DGV)USP17L28 [DGVbeta]
DECIPHERUSP17L28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L28 
Mutations
ICGC Data PortalUSP17L28 
TCGA Data PortalUSP17L28 
Broad Tumor PortalUSP17L28
OASIS PortalUSP17L28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP17L28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L28
DgiDB (Drug Gene Interaction Database)USP17L28
DoCM (Curated mutations)USP17L28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L28 (select a term)
intoGenUSP17L28
Cancer3DUSP17L28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUSP17L28
MedgenUSP17L28
Genetic Testing Registry USP17L28
NextProtQ0WX57 [Medical]
TSGene728400
GENETestsUSP17L28
Target ValidationUSP17L28
Huge Navigator USP17L28 [HugePedia]
snp3D : Map Gene to Disease728400
BioCentury BCIQUSP17L28
ClinGenUSP17L28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728400
Chemical/Pharm GKB GenePA166049144
Clinical trialUSP17L28
Miscellaneous
canSAR (ICR)USP17L28 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L28
EVEXUSP17L28
GoPubMedUSP17L28
iHOPUSP17L28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:13 CET 2017

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