Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

USP17L29 (ubiquitin specific peptidase 17-like family member 29)

Identity

Other alias-
HGNC (Hugo) USP17L29
LocusID (NCBI) 728405
Atlas_Id 75540
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9325165 and ends at 9326757 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L29   44457
Cards
Entrez_Gene (NCBI)USP17L29  728405  ubiquitin specific peptidase 17-like family member 29
Aliases
GeneCards (Weizmann)USP17L29
Ensembl hg19 (Hinxton)ENSG00000231637 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231637 [Gene_View]  chr4:9325165-9326757 [Contig_View]  USP17L29 [Vega]
ICGC DataPortalENSG00000231637
TCGA cBioPortalUSP17L29
AceView (NCBI)USP17L29
Genatlas (Paris)USP17L29
WikiGenes728405
SOURCE (Princeton)USP17L29
Genetics Home Reference (NIH)USP17L29
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L29  -     chr4:9325165-9326757 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L29  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L29 - 4p16.1 [CytoView hg19]  USP17L29 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L29 [Mapview hg19]  USP17L29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L29
Cluster EST : UnigeneHs.553810 [ NCBI ]
CGAP (NCI)Hs.553810
Alternative Splicing GalleryENSG00000231637
Gene ExpressionUSP17L29 [ NCBI-GEO ]   USP17L29 [ EBI - ARRAY_EXPRESS ]   USP17L29 [ SEEK ]   USP17L29 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728405
GTEX Portal (Tissue expression)USP17L29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L29
DMDM Disease mutations728405
Blocks (Seattle)USP17L29
SuperfamilyQ0WX57
Human Protein AtlasENSG00000231637
Peptide AtlasQ0WX57
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000231637
BioGRIDUSP17L29
STRING (EMBL)USP17L29
ZODIACUSP17L29
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUSP17L29
Atlas of Cancer Signalling NetworkUSP17L29
Wikipedia pathwaysUSP17L29
Orthology - Evolution
OrthoDB728405
GeneTree (enSembl)ENSG00000231637
Phylogenetic Trees/Animal Genes : TreeFamUSP17L29
HOVERGENQ0WX57
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L29
Homology/Alignments : Family Browser (UCSC)USP17L29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L29
dbVarUSP17L29
ClinVarUSP17L29
1000_GenomesUSP17L29 
Exome Variant ServerUSP17L29
ExAC (Exome Aggregation Consortium)USP17L29 (select the gene name)
Genetic variants : HAPMAP728405
Genomic Variants (DGV)USP17L29 [DGVbeta]
DECIPHERUSP17L29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L29 
Mutations
ICGC Data PortalUSP17L29 
TCGA Data PortalUSP17L29 
Broad Tumor PortalUSP17L29
OASIS PortalUSP17L29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP17L29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L29
DgiDB (Drug Gene Interaction Database)USP17L29
DoCM (Curated mutations)USP17L29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L29 (select a term)
intoGenUSP17L29
Cancer3DUSP17L29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L29
Genetic Testing Registry USP17L29
NextProtQ0WX57 [Medical]
TSGene728405
GENETestsUSP17L29
Target ValidationUSP17L29
Huge Navigator USP17L29 [HugePedia]
snp3D : Map Gene to Disease728405
BioCentury BCIQUSP17L29
ClinGenUSP17L29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728405
Chemical/Pharm GKB GenePA166049145
Clinical trialUSP17L29
Miscellaneous
canSAR (ICR)USP17L29 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L29
EVEXUSP17L29
GoPubMedUSP17L29
iHOPUSP17L29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:43:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.