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USP17L3 (ubiquitin specific peptidase 17-like family member 3)

Identity

Alias_namesubiquitin specific peptidase 17-like 3
Alias_symbol (synonym)USP17B
USP17F
Other alias
HGNC (Hugo) USP17L3
LocusID (NCBI) 645836
Atlas_Id 75541
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7833915 and ends at 7835507 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L3   37175
Cards
Entrez_Gene (NCBI)USP17L3  645836  ubiquitin specific peptidase 17-like family member 3
AliasesUSP17B; USP17F
GeneCards (Weizmann)USP17L3
Ensembl hg19 (Hinxton)ENSG00000225327 [Gene_View]  chr8:7833915-7835507 [Contig_View]  USP17L3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000225327 [Gene_View]  chr8:7833915-7835507 [Contig_View]  USP17L3 [Vega]
ICGC DataPortalENSG00000225327
TCGA cBioPortalUSP17L3
AceView (NCBI)USP17L3
Genatlas (Paris)USP17L3
WikiGenes645836
SOURCE (Princeton)USP17L3
Genetics Home Reference (NIH)USP17L3
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L3  -     chr8:7833915-7835507 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L3  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L3 - 8p23.1 [CytoView hg19]  USP17L3 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L3 [Mapview hg19]  USP17L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256871
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_012787 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)USP17L3
Cluster EST : UnigeneHs.741131 [ NCBI ]
CGAP (NCI)Hs.741131
Alternative Splicing GalleryENSG00000225327
Gene ExpressionUSP17L3 [ NCBI-GEO ]   USP17L3 [ EBI - ARRAY_EXPRESS ]   USP17L3 [ SEEK ]   USP17L3 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645836
GTEX Portal (Tissue expression)USP17L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCW0
Splice isoforms : SwissVarA6NCW0
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusA6NCW0
Domaine pattern : Prosite (Expaxy)USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L3
DMDM Disease mutations645836
Blocks (Seattle)USP17L3
SuperfamilyA6NCW0
Human Protein AtlasENSG00000225327
Peptide AtlasA6NCW0
IPIIPI00736169   
Protein Interaction databases
DIP (DOE-UCLA)A6NCW0
IntAct (EBI)A6NCW0
FunCoupENSG00000225327
BioGRIDUSP17L3
STRING (EMBL)USP17L3
ZODIACUSP17L3
Ontologies - Pathways
QuickGOA6NCW0
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  cysteine-type peptidase activity  ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  cysteine-type peptidase activity  ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L3
Atlas of Cancer Signalling NetworkUSP17L3
Wikipedia pathwaysUSP17L3
Orthology - Evolution
OrthoDB645836
GeneTree (enSembl)ENSG00000225327
Phylogenetic Trees/Animal Genes : TreeFamUSP17L3
HOVERGENA6NCW0
HOGENOMA6NCW0
Homologs : HomoloGeneUSP17L3
Homology/Alignments : Family Browser (UCSC)USP17L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L3
dbVarUSP17L3
ClinVarUSP17L3
1000_GenomesUSP17L3 
Exome Variant ServerUSP17L3
ExAC (Exome Aggregation Consortium)USP17L3 (select the gene name)
Genetic variants : HAPMAP645836
Genomic Variants (DGV)USP17L3 [DGVbeta]
DECIPHER (Syndromes)8:7833915-7835507  ENSG00000225327
CONAN: Copy Number AnalysisUSP17L3 
Mutations
ICGC Data PortalUSP17L3 
TCGA Data PortalUSP17L3 
Broad Tumor PortalUSP17L3
OASIS PortalUSP17L3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L3
BioMutasearch USP17L3
DgiDB (Drug Gene Interaction Database)USP17L3
DoCM (Curated mutations)USP17L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L3 (select a term)
intoGenUSP17L3
Cancer3DUSP17L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L3
Genetic Testing Registry USP17L3
NextProtA6NCW0 [Medical]
TSGene645836
GENETestsUSP17L3
Huge Navigator USP17L3 [HugePedia]
snp3D : Map Gene to Disease645836
BioCentury BCIQUSP17L3
ClinGenUSP17L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645836
Clinical trialUSP17L3
Miscellaneous
canSAR (ICR)USP17L3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L3
EVEXUSP17L3
GoPubMedUSP17L3
iHOPUSP17L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:01 CET 2017

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