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USP17L30 (ubiquitin specific peptidase 17-like family member 30)

Identity

Other alias-
HGNC (Hugo) USP17L30
LocusID (NCBI) 728419
Atlas_Id 75542
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9326891 and ends at 9328483 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L30   44458
Cards
Entrez_Gene (NCBI)USP17L30  728419  ubiquitin specific peptidase 17-like family member 30
Aliases
GeneCards (Weizmann)USP17L30
Ensembl hg19 (Hinxton)ENSG00000228856 [Gene_View]  chr4:9326891-9328483 [Contig_View]  USP17L30 [Vega]
Ensembl hg38 (Hinxton)ENSG00000228856 [Gene_View]  chr4:9326891-9328483 [Contig_View]  USP17L30 [Vega]
ICGC DataPortalENSG00000228856
TCGA cBioPortalUSP17L30
AceView (NCBI)USP17L30
Genatlas (Paris)USP17L30
WikiGenes728419
SOURCE (Princeton)USP17L30
Genetics Home Reference (NIH)USP17L30
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L30  -     chr4:9326891-9328483 +  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L30  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L30 - 4p16.1 [CytoView hg19]  USP17L30 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L30 [Mapview hg19]  USP17L30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256867
RefSeq genomic (Entrez)NC_000004 NT_006316
Consensus coding sequences : CCDS (NCBI)USP17L30
Cluster EST : UnigeneHs.553810 [ NCBI ]
CGAP (NCI)Hs.553810
Alternative Splicing GalleryENSG00000228856
Gene ExpressionUSP17L30 [ NCBI-GEO ]   USP17L30 [ EBI - ARRAY_EXPRESS ]   USP17L30 [ SEEK ]   USP17L30 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728419
GTEX Portal (Tissue expression)USP17L30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L30
DMDM Disease mutations728419
Blocks (Seattle)USP17L30
SuperfamilyQ0WX57
Human Protein AtlasENSG00000228856
Peptide AtlasQ0WX57
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000228856
BioGRIDUSP17L30
STRING (EMBL)USP17L30
ZODIACUSP17L30
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUSP17L30
Atlas of Cancer Signalling NetworkUSP17L30
Wikipedia pathwaysUSP17L30
Orthology - Evolution
OrthoDB728419
GeneTree (enSembl)ENSG00000228856
Phylogenetic Trees/Animal Genes : TreeFamUSP17L30
HOVERGENQ0WX57
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L30
Homology/Alignments : Family Browser (UCSC)USP17L30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L30
dbVarUSP17L30
ClinVarUSP17L30
1000_GenomesUSP17L30 
Exome Variant ServerUSP17L30
ExAC (Exome Aggregation Consortium)USP17L30 (select the gene name)
Genetic variants : HAPMAP728419
Genomic Variants (DGV)USP17L30 [DGVbeta]
DECIPHER (Syndromes)4:9326891-9328483  ENSG00000228856
CONAN: Copy Number AnalysisUSP17L30 
Mutations
ICGC Data PortalUSP17L30 
TCGA Data PortalUSP17L30 
Broad Tumor PortalUSP17L30
OASIS PortalUSP17L30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP17L30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L30
DgiDB (Drug Gene Interaction Database)USP17L30
DoCM (Curated mutations)USP17L30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L30 (select a term)
intoGenUSP17L30
Cancer3DUSP17L30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L30
Genetic Testing Registry USP17L30
NextProtQ0WX57 [Medical]
TSGene728419
GENETestsUSP17L30
Huge Navigator USP17L30 [HugePedia]
snp3D : Map Gene to Disease728419
BioCentury BCIQUSP17L30
ClinGenUSP17L30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728419
Clinical trialUSP17L30
Miscellaneous
canSAR (ICR)USP17L30 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L30
EVEXUSP17L30
GoPubMedUSP17L30
iHOPUSP17L30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:01 CET 2017

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