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USP17L4 (ubiquitin specific peptidase 17-like family member 4)

Identity

Alias_namesubiquitin specific peptidase 17-like 4
Other alias-
HGNC (Hugo) USP17L4
LocusID (NCBI) 645402
Atlas_Id 75543
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7194637 and ends at 7196229 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L4   37176
Cards
Entrez_Gene (NCBI)USP17L4  645402  ubiquitin specific peptidase 17-like family member 4
Aliases
GeneCards (Weizmann)USP17L4
Ensembl hg19 (Hinxton)ENSG00000236125 [Gene_View]  chr8:7194637-7196229 [Contig_View]  USP17L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000236125 [Gene_View]  chr8:7194637-7196229 [Contig_View]  USP17L4 [Vega]
ICGC DataPortalENSG00000236125
TCGA cBioPortalUSP17L4
AceView (NCBI)USP17L4
Genatlas (Paris)USP17L4
WikiGenes645402
SOURCE (Princeton)USP17L4
Genetics Home Reference (NIH)USP17L4
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L4  -     chr8:7194637-7196229 +  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L4  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L4 - 8p23.1 [CytoView hg19]  USP17L4 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L4 [Mapview hg19]  USP17L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256874
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_012785 NT_023736 NW_004929335
Consensus coding sequences : CCDS (NCBI)USP17L4
Cluster EST : UnigeneHs.741134 [ NCBI ]
CGAP (NCI)Hs.741134
Alternative Splicing GalleryENSG00000236125
Gene ExpressionUSP17L4 [ NCBI-GEO ]   USP17L4 [ EBI - ARRAY_EXPRESS ]   USP17L4 [ SEEK ]   USP17L4 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645402
GTEX Portal (Tissue expression)USP17L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCW7
Splice isoforms : SwissVarA6NCW7
PhosPhoSitePlusA6NCW7
Domaine pattern : Prosite (Expaxy)USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L4
DMDM Disease mutations645402
Blocks (Seattle)USP17L4
SuperfamilyA6NCW7
Human Protein AtlasENSG00000236125
Peptide AtlasA6NCW7
IPIIPI00739049   
Protein Interaction databases
DIP (DOE-UCLA)A6NCW7
IntAct (EBI)A6NCW7
FunCoupENSG00000236125
BioGRIDUSP17L4
STRING (EMBL)USP17L4
ZODIACUSP17L4
Ontologies - Pathways
QuickGOA6NCW7
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L4
Atlas of Cancer Signalling NetworkUSP17L4
Wikipedia pathwaysUSP17L4
Orthology - Evolution
OrthoDB645402
GeneTree (enSembl)ENSG00000236125
Phylogenetic Trees/Animal Genes : TreeFamUSP17L4
HOVERGENA6NCW7
HOGENOMA6NCW7
Homologs : HomoloGeneUSP17L4
Homology/Alignments : Family Browser (UCSC)USP17L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L4
dbVarUSP17L4
ClinVarUSP17L4
1000_GenomesUSP17L4 
Exome Variant ServerUSP17L4
ExAC (Exome Aggregation Consortium)USP17L4 (select the gene name)
Genetic variants : HAPMAP645402
Genomic Variants (DGV)USP17L4 [DGVbeta]
DECIPHER (Syndromes)8:7194637-7196229  ENSG00000236125
CONAN: Copy Number AnalysisUSP17L4 
Mutations
ICGC Data PortalUSP17L4 
TCGA Data PortalUSP17L4 
Broad Tumor PortalUSP17L4
OASIS PortalUSP17L4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L4
BioMutasearch USP17L4
DgiDB (Drug Gene Interaction Database)USP17L4
DoCM (Curated mutations)USP17L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L4 (select a term)
intoGenUSP17L4
Cancer3DUSP17L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L4
Genetic Testing Registry USP17L4
NextProtA6NCW7 [Medical]
TSGene645402
GENETestsUSP17L4
Huge Navigator USP17L4 [HugePedia]
snp3D : Map Gene to Disease645402
BioCentury BCIQUSP17L4
ClinGenUSP17L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645402
Clinical trialUSP17L4
Miscellaneous
canSAR (ICR)USP17L4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L4
EVEXUSP17L4
GoPubMedUSP17L4
iHOPUSP17L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:01 CET 2017

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