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USP17L5 (ubiquitin specific peptidase 17-like family member 5)

Identity

Alias_namesubiquitin specific peptidase 17-like 5
Other alias-
HGNC (Hugo) USP17L5
LocusID (NCBI) 728386
Atlas_Id 75544
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9325165 and ends at 9326757 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L5   37177
Cards
Entrez_Gene (NCBI)USP17L5  728386  ubiquitin specific peptidase 17-like family member 5
Aliases
GeneCards (Weizmann)USP17L5
Ensembl hg19 (Hinxton)ENSG00000227140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227140 [Gene_View]  chr4:9325165-9326757 [Contig_View]  USP17L5 [Vega]
ICGC DataPortalENSG00000227140
TCGA cBioPortalUSP17L5
AceView (NCBI)USP17L5
Genatlas (Paris)USP17L5
WikiGenes728386
SOURCE (Princeton)USP17L5
Genetics Home Reference (NIH)USP17L5
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L5  -     chr4:9325165-9326757 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L5  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L5 - 4p16.1 [CytoView hg19]  USP17L5 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L5 [Mapview hg19]  USP17L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242329
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L5
Cluster EST : UnigeneHs.740243 [ NCBI ]
CGAP (NCI)Hs.740243
Alternative Splicing GalleryENSG00000227140
Gene ExpressionUSP17L5 [ NCBI-GEO ]   USP17L5 [ EBI - ARRAY_EXPRESS ]   USP17L5 [ SEEK ]   USP17L5 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728386
GTEX Portal (Tissue expression)USP17L5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUK1
Splice isoforms : SwissVarA8MUK1
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusA8MUK1
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L5
DMDM Disease mutations728386
Blocks (Seattle)USP17L5
SuperfamilyA8MUK1
Human Protein AtlasENSG00000227140
Peptide AtlasA8MUK1
IPIIPI00880103   
Protein Interaction databases
DIP (DOE-UCLA)A8MUK1
IntAct (EBI)A8MUK1
FunCoupENSG00000227140
BioGRIDUSP17L5
STRING (EMBL)USP17L5
ZODIACUSP17L5
Ontologies - Pathways
QuickGOA8MUK1
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L5
Atlas of Cancer Signalling NetworkUSP17L5
Wikipedia pathwaysUSP17L5
Orthology - Evolution
OrthoDB728386
GeneTree (enSembl)ENSG00000227140
Phylogenetic Trees/Animal Genes : TreeFamUSP17L5
HOVERGENA8MUK1
HOGENOMA8MUK1
Homologs : HomoloGeneUSP17L5
Homology/Alignments : Family Browser (UCSC)USP17L5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L5
dbVarUSP17L5
ClinVarUSP17L5
1000_GenomesUSP17L5 
Exome Variant ServerUSP17L5
ExAC (Exome Aggregation Consortium)USP17L5 (select the gene name)
Genetic variants : HAPMAP728386
Genomic Variants (DGV)USP17L5 [DGVbeta]
DECIPHERUSP17L5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L5 
Mutations
ICGC Data PortalUSP17L5 
TCGA Data PortalUSP17L5 
Broad Tumor PortalUSP17L5
OASIS PortalUSP17L5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L5
DgiDB (Drug Gene Interaction Database)USP17L5
DoCM (Curated mutations)USP17L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L5 (select a term)
intoGenUSP17L5
Cancer3DUSP17L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L5
Genetic Testing Registry USP17L5
NextProtA8MUK1 [Medical]
TSGene728386
GENETestsUSP17L5
Target ValidationUSP17L5
Huge Navigator USP17L5 [HugePedia]
snp3D : Map Gene to Disease728386
BioCentury BCIQUSP17L5
ClinGenUSP17L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728386
Chemical/Pharm GKB GenePA165664776
Clinical trialUSP17L5
Miscellaneous
canSAR (ICR)USP17L5 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L5
EVEXUSP17L5
GoPubMedUSP17L5
iHOPUSP17L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:24 CEST 2017

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