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USP17L6P (ubiquitin specific peptidase 17-like family member 6, pseudogene)

Identity

Alias_namesubiquitin specific peptidase 17-like 6, pseudogene
Alias_symbol (synonym)DUB4
vDUB4
USP17L6
Other alias
HGNC (Hugo) USP17L6P
LocusID (NCBI) 391622
Atlas_Id 75545
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9367874 and ends at 9369070 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L6P   37179
Cards
Entrez_Gene (NCBI)USP17L6P  391622  ubiquitin specific peptidase 17-like family member 6, pseudogene
AliasesDUB4; USP17L6; vDUB4
GeneCards (Weizmann)USP17L6P
Ensembl hg19 (Hinxton)ENSG00000205946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205946 [Gene_View]  chr4:9367874-9369070 [Contig_View]  USP17L6P [Vega]
ICGC DataPortalENSG00000205946
TCGA cBioPortalUSP17L6P
AceView (NCBI)USP17L6P
Genatlas (Paris)USP17L6P
WikiGenes391622
SOURCE (Princeton)USP17L6P
Genetics Home Reference (NIH)USP17L6P
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L6P  -     chr4:9367874-9369070 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L6P  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L6P - 4p16.1 [CytoView hg19]  USP17L6P - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L6P [Mapview hg19]  USP17L6P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY533200
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L6P
Cluster EST : UnigeneHs.722658 [ NCBI ]
CGAP (NCI)Hs.722658
Alternative Splicing GalleryENSG00000205946
Gene ExpressionUSP17L6P [ NCBI-GEO ]   USP17L6P [ EBI - ARRAY_EXPRESS ]   USP17L6P [ SEEK ]   USP17L6P [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L6P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391622
GTEX Portal (Tissue expression)USP17L6P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6QN14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6QN14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6QN14
Splice isoforms : SwissVarQ6QN14
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ6QN14
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L6P
DMDM Disease mutations391622
Blocks (Seattle)USP17L6P
SuperfamilyQ6QN14
Human Protein AtlasENSG00000205946
Peptide AtlasQ6QN14
IPIIPI00740629   IPI00952979   
Protein Interaction databases
DIP (DOE-UCLA)Q6QN14
IntAct (EBI)Q6QN14
FunCoupENSG00000205946
BioGRIDUSP17L6P
STRING (EMBL)USP17L6P
ZODIACUSP17L6P
Ontologies - Pathways
QuickGOQ6QN14
Ontology : AmiGOnucleus  cytoplasm  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  cytoplasm  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L6P
Atlas of Cancer Signalling NetworkUSP17L6P
Wikipedia pathwaysUSP17L6P
Orthology - Evolution
OrthoDB391622
GeneTree (enSembl)ENSG00000205946
Phylogenetic Trees/Animal Genes : TreeFamUSP17L6P
HOVERGENQ6QN14
HOGENOMQ6QN14
Homologs : HomoloGeneUSP17L6P
Homology/Alignments : Family Browser (UCSC)USP17L6P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L6P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L6P
dbVarUSP17L6P
ClinVarUSP17L6P
1000_GenomesUSP17L6P 
Exome Variant ServerUSP17L6P
ExAC (Exome Aggregation Consortium)USP17L6P (select the gene name)
Genetic variants : HAPMAP391622
Genomic Variants (DGV)USP17L6P [DGVbeta]
DECIPHERUSP17L6P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L6P 
Mutations
ICGC Data PortalUSP17L6P 
TCGA Data PortalUSP17L6P 
Broad Tumor PortalUSP17L6P
OASIS PortalUSP17L6P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L6P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L6P
DgiDB (Drug Gene Interaction Database)USP17L6P
DoCM (Curated mutations)USP17L6P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L6P (select a term)
intoGenUSP17L6P
Cancer3DUSP17L6P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L6P
Genetic Testing Registry USP17L6P
NextProtQ6QN14 [Medical]
TSGene391622
GENETestsUSP17L6P
Target ValidationUSP17L6P
Huge Navigator USP17L6P [HugePedia]
snp3D : Map Gene to Disease391622
BioCentury BCIQUSP17L6P
ClinGenUSP17L6P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391622
Clinical trialUSP17L6P
Miscellaneous
canSAR (ICR)USP17L6P (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L6P
EVEXUSP17L6P
GoPubMedUSP17L6P
iHOPUSP17L6P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:25 CEST 2017

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