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USP17L7 (ubiquitin specific peptidase 17-like family member 7)

Identity

Alias_namesubiquitin specific peptidase 17-like 7
Other alias-
HGNC (Hugo) USP17L7
LocusID (NCBI) 392197
Atlas_Id 75546
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12132417 and ends at 12134009 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L7   37180
Cards
Entrez_Gene (NCBI)USP17L7  392197  ubiquitin specific peptidase 17-like family member 7
Aliases
GeneCards (Weizmann)USP17L7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:12132417-12134009 [Contig_View]  USP17L7 [Vega]
TCGA cBioPortalUSP17L7
AceView (NCBI)USP17L7
Genatlas (Paris)USP17L7
WikiGenes392197
SOURCE (Princeton)USP17L7
Genetics Home Reference (NIH)USP17L7
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L7  -     chr8:12132417-12134009 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L7  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L7 - 8p23.1 [CytoView hg19]  USP17L7 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L7 [Mapview hg19]  USP17L7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256869
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L7
Cluster EST : UnigeneHs.741132 [ NCBI ]
CGAP (NCI)Hs.741132
Gene ExpressionUSP17L7 [ NCBI-GEO ]   USP17L7 [ EBI - ARRAY_EXPRESS ]   USP17L7 [ SEEK ]   USP17L7 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392197
GTEX Portal (Tissue expression)USP17L7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7H9
Splice isoforms : SwissVarP0C7H9
PhosPhoSitePlusP0C7H9
Domaine pattern : Prosite (Expaxy)USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L7
DMDM Disease mutations392197
Blocks (Seattle)USP17L7
SuperfamilyP0C7H9
Peptide AtlasP0C7H9
IPIIPI00398229   
Protein Interaction databases
DIP (DOE-UCLA)P0C7H9
IntAct (EBI)P0C7H9
BioGRIDUSP17L7
STRING (EMBL)USP17L7
ZODIACUSP17L7
Ontologies - Pathways
QuickGOP0C7H9
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L7
Atlas of Cancer Signalling NetworkUSP17L7
Wikipedia pathwaysUSP17L7
Orthology - Evolution
OrthoDB392197
Phylogenetic Trees/Animal Genes : TreeFamUSP17L7
HOVERGENP0C7H9
HOGENOMP0C7H9
Homologs : HomoloGeneUSP17L7
Homology/Alignments : Family Browser (UCSC)USP17L7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L7
dbVarUSP17L7
ClinVarUSP17L7
1000_GenomesUSP17L7 
Exome Variant ServerUSP17L7
ExAC (Exome Aggregation Consortium)USP17L7 (select the gene name)
Genetic variants : HAPMAP392197
Genomic Variants (DGV)USP17L7 [DGVbeta]
DECIPHERUSP17L7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L7 
Mutations
ICGC Data PortalUSP17L7 
TCGA Data PortalUSP17L7 
Broad Tumor PortalUSP17L7
OASIS PortalUSP17L7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L7
DgiDB (Drug Gene Interaction Database)USP17L7
DoCM (Curated mutations)USP17L7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L7 (select a term)
intoGenUSP17L7
Cancer3DUSP17L7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L7
Genetic Testing Registry USP17L7
NextProtP0C7H9 [Medical]
TSGene392197
GENETestsUSP17L7
Target ValidationUSP17L7
Huge Navigator USP17L7 [HugePedia]
snp3D : Map Gene to Disease392197
BioCentury BCIQUSP17L7
ClinGenUSP17L7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392197
Chemical/Pharm GKB GenePA166049022
Clinical trialUSP17L7
Miscellaneous
canSAR (ICR)USP17L7 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L7
EVEXUSP17L7
GoPubMedUSP17L7
iHOPUSP17L7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:24 CEST 2017

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