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USP17L8 (ubiquitin specific peptidase 17-like family member 8)

Identity

Alias_namesubiquitin specific peptidase 17-like 8
Other aliasUSP17L10
HGNC (Hugo) USP17L8
LocusID (NCBI) 392188
Atlas_Id 75547
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7829183 and ends at 7830775 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L8   37181
Cards
Entrez_Gene (NCBI)USP17L8  392188  ubiquitin specific peptidase 17-like family member 8
AliasesUSP17L10
GeneCards (Weizmann)USP17L8
Ensembl hg19 (Hinxton)ENSG00000237038 [Gene_View]  chr8:7829183-7830775 [Contig_View]  USP17L8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237038 [Gene_View]  chr8:7829183-7830775 [Contig_View]  USP17L8 [Vega]
ICGC DataPortalENSG00000237038
TCGA cBioPortalUSP17L8
AceView (NCBI)USP17L8
Genatlas (Paris)USP17L8
WikiGenes392188
SOURCE (Princeton)USP17L8
Genetics Home Reference (NIH)USP17L8
Genomic and cartography
GoldenPath hg19 (UCSC)USP17L8  -     chr8:7829183-7830775 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP17L8  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblUSP17L8 - 8p23.1 [CytoView hg19]  USP17L8 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L8 [Mapview hg19]  USP17L8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256872
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_012786 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)USP17L8
Cluster EST : UnigeneHs.741135 [ NCBI ]
CGAP (NCI)Hs.741135
Alternative Splicing GalleryENSG00000237038
Gene ExpressionUSP17L8 [ NCBI-GEO ]   USP17L8 [ EBI - ARRAY_EXPRESS ]   USP17L8 [ SEEK ]   USP17L8 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392188
GTEX Portal (Tissue expression)USP17L8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7I0
Splice isoforms : SwissVarP0C7I0
PhosPhoSitePlusP0C7I0
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L8
DMDM Disease mutations392188
Blocks (Seattle)USP17L8
SuperfamilyP0C7I0
Human Protein AtlasENSG00000237038
Peptide AtlasP0C7I0
IPIIPI00398228   
Protein Interaction databases
DIP (DOE-UCLA)P0C7I0
IntAct (EBI)P0C7I0
FunCoupENSG00000237038
BioGRIDUSP17L8
STRING (EMBL)USP17L8
ZODIACUSP17L8
Ontologies - Pathways
QuickGOP0C7I0
Ontology : AmiGOnucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L8
Atlas of Cancer Signalling NetworkUSP17L8
Wikipedia pathwaysUSP17L8
Orthology - Evolution
OrthoDB392188
GeneTree (enSembl)ENSG00000237038
Phylogenetic Trees/Animal Genes : TreeFamUSP17L8
HOVERGENP0C7I0
HOGENOMP0C7I0
Homologs : HomoloGeneUSP17L8
Homology/Alignments : Family Browser (UCSC)USP17L8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L8
dbVarUSP17L8
ClinVarUSP17L8
1000_GenomesUSP17L8 
Exome Variant ServerUSP17L8
ExAC (Exome Aggregation Consortium)USP17L8 (select the gene name)
Genetic variants : HAPMAP392188
Genomic Variants (DGV)USP17L8 [DGVbeta]
DECIPHER (Syndromes)8:7829183-7830775  ENSG00000237038
CONAN: Copy Number AnalysisUSP17L8 
Mutations
ICGC Data PortalUSP17L8 
TCGA Data PortalUSP17L8 
Broad Tumor PortalUSP17L8
OASIS PortalUSP17L8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L8
DgiDB (Drug Gene Interaction Database)USP17L8
DoCM (Curated mutations)USP17L8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L8 (select a term)
intoGenUSP17L8
Cancer3DUSP17L8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP17L8
Genetic Testing Registry USP17L8
NextProtP0C7I0 [Medical]
TSGene392188
GENETestsUSP17L8
Huge Navigator USP17L8 [HugePedia]
snp3D : Map Gene to Disease392188
BioCentury BCIQUSP17L8
ClinGenUSP17L8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392188
Clinical trialUSP17L8
Miscellaneous
canSAR (ICR)USP17L8 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L8
EVEXUSP17L8
GoPubMedUSP17L8
iHOPUSP17L8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:02 CET 2017

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