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USP17L9P (ubiquitin specific peptidase 17-like family member 9, pseudogene)

Identity

Alias_namesUSP17
ubiquitin specific peptidase 17
Alias_symbol (synonym)RS447
Other aliasUSP17A
USP17H
USP17I
USP17J
USP17K
USP17L
USP17M
HGNC (Hugo) USP17L9P
LocusID (NCBI) 391627
Atlas_Id 51462
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9353638 and ends at 9355230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP17L9P   12615
Cards
Entrez_Gene (NCBI)USP17L9P  391627  ubiquitin specific peptidase 17-like family member 9, pseudogene
AliasesRS447; USP17; USP17A; USP17H; 
USP17I; USP17J; USP17K; USP17L; USP17M
GeneCards (Weizmann)USP17L9P
Ensembl hg19 (Hinxton)ENSG00000251694 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251694 [Gene_View]  chr4:9353638-9355230 [Contig_View]  USP17L9P [Vega]
ICGC DataPortalENSG00000251694
TCGA cBioPortalUSP17L9P
AceView (NCBI)USP17L9P
Genatlas (Paris)USP17L9P
WikiGenes391627
SOURCE (Princeton)USP17L9P
Genetics Home Reference (NIH)USP17L9P
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L9P  -     chr4:9353638-9355230 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L9P  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblUSP17L9P - 4p16.1 [CytoView hg19]  USP17L9P - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIUSP17L9P [Mapview hg19]  USP17L9P [Mapview hg38]
OMIM607011   
Gene and transcription
Genbank (Entrez)AF544011 AF544012 BC100991 BC100992 BC100993
RefSeq transcript (Entrez)NM_001105662
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L9P
Cluster EST : UnigeneHs.723053 [ NCBI ]
CGAP (NCI)Hs.723053
Alternative Splicing GalleryENSG00000251694
Gene ExpressionUSP17L9P [ NCBI-GEO ]   USP17L9P [ EBI - ARRAY_EXPRESS ]   USP17L9P [ SEEK ]   USP17L9P [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L9P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391627
GTEX Portal (Tissue expression)USP17L9P
Human Protein AtlasENSG00000251694-USP17L9P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L9P
DMDM Disease mutations391627
Blocks (Seattle)USP17L9P
SuperfamilyQ0WX57
Human Protein Atlas [tissue]ENSG00000251694-USP17L9P [tissue]
Peptide AtlasQ0WX57
IPIIPI00736155   
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000251694
BioGRIDUSP17L9P
STRING (EMBL)USP17L9P
ZODIACUSP17L9P
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGOnucleolus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBInucleolus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  apoptotic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP17L9P
Atlas of Cancer Signalling NetworkUSP17L9P
Wikipedia pathwaysUSP17L9P
Orthology - Evolution
OrthoDB391627
GeneTree (enSembl)ENSG00000251694
Phylogenetic Trees/Animal Genes : TreeFamUSP17L9P
HOVERGENQ0WX57
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L9P
Homology/Alignments : Family Browser (UCSC)USP17L9P
Gene fusions - Rearrangements
Tumor Fusion PortalUSP17L9P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L9P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L9P
dbVarUSP17L9P
ClinVarUSP17L9P
1000_GenomesUSP17L9P 
Exome Variant ServerUSP17L9P
ExAC (Exome Aggregation Consortium)ENSG00000251694
GNOMAD BrowserENSG00000251694
Genetic variants : HAPMAP391627
Genomic Variants (DGV)USP17L9P [DGVbeta]
DECIPHERUSP17L9P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L9P 
Mutations
ICGC Data PortalUSP17L9P 
TCGA Data PortalUSP17L9P 
Broad Tumor PortalUSP17L9P
OASIS PortalUSP17L9P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSP17L9P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP17L9P
DgiDB (Drug Gene Interaction Database)USP17L9P
DoCM (Curated mutations)USP17L9P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L9P (select a term)
intoGenUSP17L9P
Cancer3DUSP17L9P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607011   
Orphanet
DisGeNETUSP17L9P
MedgenUSP17L9P
Genetic Testing Registry USP17L9P
NextProtQ0WX57 [Medical]
TSGene391627
GENETestsUSP17L9P
Target ValidationUSP17L9P
Huge Navigator USP17L9P [HugePedia]
snp3D : Map Gene to Disease391627
BioCentury BCIQUSP17L9P
ClinGenUSP17L9P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391627
Chemical/Pharm GKB GenePA37241
Clinical trialUSP17L9P
Miscellaneous
canSAR (ICR)USP17L9P (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L9P
EVEXUSP17L9P
GoPubMedUSP17L9P
iHOPUSP17L9P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:41:00 CET 2017

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