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USP20 (ubiquitin specific peptidase 20)

Identity

Alias_namesubiquitin specific protease 20
Alias_symbol (synonym)KIAA1003
Other aliasLSFR3A
VDU2
hVDU2
HGNC (Hugo) USP20
LocusID (NCBI) 10868
Atlas_Id 55017
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129835417 and ends at 129881838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NPIPB7 (16q23.1) / USP20 (9q34.11)TSPAN1 (1p34.1) / USP20 (9q34.11)TSPYL2 (Xp11.22) / USP20 (9q34.11)
USP20 (9q34.11) / USP20 (9q34.11)TSPAN1 1p34.1 / USP20 9q34.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP20   12619
Cards
Entrez_Gene (NCBI)USP20  10868  ubiquitin specific peptidase 20
AliasesLSFR3A; VDU2; hVDU2
GeneCards (Weizmann)USP20
Ensembl hg19 (Hinxton)ENSG00000136878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136878 [Gene_View]  chr9:129835417-129881838 [Contig_View]  USP20 [Vega]
ICGC DataPortalENSG00000136878
TCGA cBioPortalUSP20
AceView (NCBI)USP20
Genatlas (Paris)USP20
WikiGenes10868
SOURCE (Princeton)USP20
Genetics Home Reference (NIH)USP20
Genomic and cartography
GoldenPath hg38 (UCSC)USP20  -     chr9:129835417-129881838 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP20  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblUSP20 - 9q34.11 [CytoView hg19]  USP20 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIUSP20 [Mapview hg19]  USP20 [Mapview hg38]
OMIM615143   
Gene and transcription
Genbank (Entrez)AB023220 AY074877 BC033669 BC039593 BF727180
RefSeq transcript (Entrez)NM_001008563 NM_001110303 NM_006676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP20
Cluster EST : UnigeneHs.5452 [ NCBI ]
CGAP (NCI)Hs.5452
Alternative Splicing GalleryENSG00000136878
Gene ExpressionUSP20 [ NCBI-GEO ]   USP20 [ EBI - ARRAY_EXPRESS ]   USP20 [ SEEK ]   USP20 [ MEM ]
Gene Expression Viewer (FireBrowse)USP20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10868
GTEX Portal (Tissue expression)USP20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2K6
Splice isoforms : SwissVarQ9Y2K6
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ9Y2K6
Domaine pattern : Prosite (Expaxy)DUSP (PS51283)    USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)    ZF_UBP (PS50271)   
Domains : Interpro (EBI)Pept_C19_DUSP    Peptidase_C19_UCH    USP_CS    USP_dom    Znf_RING/FYVE/PHD    Znf_UBP   
Domain families : Pfam (Sanger)DUSP (PF06337)    UCH (PF00443)    zf-UBP (PF02148)   
Domain families : Pfam (NCBI)pfam06337    pfam00443    pfam02148   
Domain families : Smart (EMBL)DUSP (SM00695)  ZnF_UBP (SM00290)  
Conserved Domain (NCBI)USP20
DMDM Disease mutations10868
Blocks (Seattle)USP20
SuperfamilyQ9Y2K6
Human Protein AtlasENSG00000136878
Peptide AtlasQ9Y2K6
HPRD07505
IPIIPI00328285   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2K6
IntAct (EBI)Q9Y2K6
FunCoupENSG00000136878
BioGRIDUSP20
STRING (EMBL)USP20
ZODIACUSP20
Ontologies - Pathways
QuickGOQ9Y2K6
Ontology : AmiGOG-protein coupled receptor binding  cysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  protein binding  centrosome  cytosol  ubiquitin-dependent protein catabolic process  endocytosis  zinc ion binding  regulation of G-protein coupled receptor protein signaling pathway  protein deubiquitination  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  perinuclear region of cytoplasm  protein K63-linked deubiquitination  protein K48-linked deubiquitination  
Ontology : EGO-EBIG-protein coupled receptor binding  cysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  protein binding  centrosome  cytosol  ubiquitin-dependent protein catabolic process  endocytosis  zinc ion binding  regulation of G-protein coupled receptor protein signaling pathway  protein deubiquitination  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  perinuclear region of cytoplasm  protein K63-linked deubiquitination  protein K48-linked deubiquitination  
NDEx NetworkUSP20
Atlas of Cancer Signalling NetworkUSP20
Wikipedia pathwaysUSP20
Orthology - Evolution
OrthoDB10868
GeneTree (enSembl)ENSG00000136878
Phylogenetic Trees/Animal Genes : TreeFamUSP20
HOVERGENQ9Y2K6
HOGENOMQ9Y2K6
Homologs : HomoloGeneUSP20
Homology/Alignments : Family Browser (UCSC)USP20
Gene fusions - Rearrangements
Fusion : MitelmanTSPAN1/USP20 [1p34.1/9q34.11]  [t(1;9)(p34;q34)]  
Fusion: TCGATSPAN1 1p34.1 USP20 9q34.11 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP20
dbVarUSP20
ClinVarUSP20
1000_GenomesUSP20 
Exome Variant ServerUSP20
ExAC (Exome Aggregation Consortium)USP20 (select the gene name)
Genetic variants : HAPMAP10868
Genomic Variants (DGV)USP20 [DGVbeta]
DECIPHERUSP20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP20 
Mutations
ICGC Data PortalUSP20 
TCGA Data PortalUSP20 
Broad Tumor PortalUSP20
OASIS PortalUSP20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP20
DgiDB (Drug Gene Interaction Database)USP20
DoCM (Curated mutations)USP20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP20 (select a term)
intoGenUSP20
Cancer3DUSP20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615143   
Orphanet
MedgenUSP20
Genetic Testing Registry USP20
NextProtQ9Y2K6 [Medical]
TSGene10868
GENETestsUSP20
Target ValidationUSP20
Huge Navigator USP20 [HugePedia]
snp3D : Map Gene to Disease10868
BioCentury BCIQUSP20
ClinGenUSP20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10868
Chemical/Pharm GKB GenePA37245
Clinical trialUSP20
Miscellaneous
canSAR (ICR)USP20 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP20
EVEXUSP20
GoPubMedUSP20
iHOPUSP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:02:10 CEST 2017

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