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USP24 (ubiquitin specific peptidase 24)

Identity

Alias_namesubiquitin specific protease 24
Alias_symbol (synonym)KIAA1057
Other alias-
HGNC (Hugo) USP24
LocusID (NCBI) 23358
Atlas_Id 54759
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 55532032 and ends at 55681039 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDK1 (10q21.2) / USP24 (1p32.3)LRP8 (1p32.3) / USP24 (1p32.3)NRDC (1p32.3) / USP24 (1p32.3)
USP24 (1p32.3) / NFAT5 (16q22.1)LRP8 1p32.3 / USP24 1p32.3NRD1 1p32.3 / USP24 1p32.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)USP24   12623
Cards
Entrez_Gene (NCBI)USP24  23358  ubiquitin specific peptidase 24
Aliases
GeneCards (Weizmann)USP24
Ensembl hg19 (Hinxton)ENSG00000162402 [Gene_View]  chr1:55532032-55681039 [Contig_View]  USP24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162402 [Gene_View]  chr1:55532032-55681039 [Contig_View]  USP24 [Vega]
ICGC DataPortalENSG00000162402
TCGA cBioPortalUSP24
AceView (NCBI)USP24
Genatlas (Paris)USP24
WikiGenes23358
SOURCE (Princeton)USP24
Genetics Home Reference (NIH)USP24
Genomic and cartography
GoldenPath hg19 (UCSC)USP24  -     chr1:55532032-55681039 -  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP24  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblUSP24 - 1p32.3 [CytoView hg19]  USP24 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIUSP24 [Mapview hg19]  USP24 [Mapview hg38]
OMIM610569   
Gene and transcription
Genbank (Entrez)AB028980 AK000321 AK055871 AK127075 AL832370
RefSeq transcript (Entrez)NM_015306
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)USP24
Cluster EST : UnigeneHs.477009 [ NCBI ]
CGAP (NCI)Hs.477009
Alternative Splicing GalleryENSG00000162402
Gene ExpressionUSP24 [ NCBI-GEO ]   USP24 [ EBI - ARRAY_EXPRESS ]   USP24 [ SEEK ]   USP24 [ MEM ]
Gene Expression Viewer (FireBrowse)USP24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23358
GTEX Portal (Tissue expression)USP24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPU5
Splice isoforms : SwissVarQ9UPU5
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ9UPU5
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)ARM-type_fold    Peptidase_C19_UCH    UBA    UBA-like    Ubiquitin-rel_dom    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP24
DMDM Disease mutations23358
Blocks (Seattle)USP24
SuperfamilyQ9UPU5
Human Protein AtlasENSG00000162402
Peptide AtlasQ9UPU5
IPIIPI00902614   IPI00914628   IPI00920984   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPU5
IntAct (EBI)Q9UPU5
FunCoupENSG00000162402
BioGRIDUSP24
STRING (EMBL)USP24
ZODIACUSP24
Ontologies - Pathways
QuickGOQ9UPU5
Ontology : AmiGOcytoplasm  ubiquitin-dependent protein catabolic process  cell migration  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBIcytoplasm  ubiquitin-dependent protein catabolic process  cell migration  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP24
Atlas of Cancer Signalling NetworkUSP24
Wikipedia pathwaysUSP24
Orthology - Evolution
OrthoDB23358
GeneTree (enSembl)ENSG00000162402
Phylogenetic Trees/Animal Genes : TreeFamUSP24
HOVERGENQ9UPU5
HOGENOMQ9UPU5
Homologs : HomoloGeneUSP24
Homology/Alignments : Family Browser (UCSC)USP24
Gene fusions - Rearrangements
Fusion : MitelmanCDK1/USP24 [10q21.2/1p32.3]  [t(1;10)(p32;q21)]  
Fusion : MitelmanLRP8/USP24 [1p32.3/1p32.3]  [t(1;1)(p32;p32)]  
Fusion : MitelmanNRD1/USP24 [1p32.3/1p32.3]  [t(1;1)(p32;p32)]  
Fusion: TCGALRP8 1p32.3 USP24 1p32.3 LUAD
Fusion: TCGANRD1 1p32.3 USP24 1p32.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP24
dbVarUSP24
ClinVarUSP24
1000_GenomesUSP24 
Exome Variant ServerUSP24
ExAC (Exome Aggregation Consortium)USP24 (select the gene name)
Genetic variants : HAPMAP23358
Genomic Variants (DGV)USP24 [DGVbeta]
DECIPHER (Syndromes)1:55532032-55681039  ENSG00000162402
CONAN: Copy Number AnalysisUSP24 
Mutations
ICGC Data PortalUSP24 
TCGA Data PortalUSP24 
Broad Tumor PortalUSP24
OASIS PortalUSP24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP24
DgiDB (Drug Gene Interaction Database)USP24
DoCM (Curated mutations)USP24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP24 (select a term)
intoGenUSP24
Cancer3DUSP24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610569   
Orphanet
MedgenUSP24
Genetic Testing Registry USP24
NextProtQ9UPU5 [Medical]
TSGene23358
GENETestsUSP24
Huge Navigator USP24 [HugePedia]
snp3D : Map Gene to Disease23358
BioCentury BCIQUSP24
ClinGenUSP24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23358
Chemical/Pharm GKB GenePA37248
Clinical trialUSP24
Miscellaneous
canSAR (ICR)USP24 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP24
EVEXUSP24
GoPubMedUSP24
iHOPUSP24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:33:36 CET 2017

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