Atlas of Genetics and Cytogenetics in Oncology and Haematology

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USP28 (ubiquitin specific peptidase 28)

Identity

Alias (NCBI)-
HGNC (Hugo) USP28
HGNC Alias symbKIAA1515
HGNC Previous nameubiquitin specific protease 28
LocusID (NCBI) 57646
Atlas_Id 49733
Location 11q23.2  [Link to chromosome band 11q23]
Location_base_pair Starts at 113797875 and ends at 113875572 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PAFAH1B2 (11q23.3) / USP28 (11q23.2)PELI2 (14q22.3) / USP28 (11q23.2)SKIV2L2 (5q11.2) / USP28 (11q23.2)
USP28 (11q23.2) / DLG2 (11q14.1)SKIV2L2 5q11.2 / USP28 11q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USP28   12625
Cards
Entrez_Gene (NCBI)USP28    ubiquitin specific peptidase 28
Aliases
GeneCards (Weizmann)USP28
Ensembl hg19 (Hinxton)ENSG00000048028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000048028 [Gene_View]  ENSG00000048028 [Sequence]  chr11:113797875-113875572 [Contig_View]  USP28 [Vega]
ICGC DataPortalENSG00000048028
TCGA cBioPortalUSP28
AceView (NCBI)USP28
Genatlas (Paris)USP28
SOURCE (Princeton)USP28
Genetics Home Reference (NIH)USP28
Genomic and cartography
GoldenPath hg38 (UCSC)USP28  -     chr11:113797875-113875572 -  11q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP28  -     11q23.2   [Description]    (hg19-Feb_2009)
GoldenPathUSP28 - 11q23.2 [CytoView hg19]  USP28 - 11q23.2 [CytoView hg38]
ImmunoBaseENSG00000048028
genome Data Viewer NCBIUSP28 [Mapview hg19]  
OMIM610748   
Gene and transcription
Genbank (Entrez)AB040948 AF266283 AK027521 AK097623 AK304376
RefSeq transcript (Entrez)NM_001301029 NM_001346252 NM_001346253 NM_001346254 NM_001346255 NM_001346257 NM_001346258 NM_001346259 NM_001346260 NM_001346261 NM_001346262 NM_001346263 NM_001346264 NM_001346265 NM_001346267 NM_001346268 NM_001346269 NM_001346270 NM_001346271 NM_001346272 NM_001346273 NM_020886
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP28
Alternative Splicing GalleryENSG00000048028
Gene ExpressionUSP28 [ NCBI-GEO ]   USP28 [ EBI - ARRAY_EXPRESS ]   USP28 [ SEEK ]   USP28 [ MEM ]
Gene Expression Viewer (FireBrowse)USP28 [ Firebrowse - Broad ]
GenevisibleExpression of USP28 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57646
GTEX Portal (Tissue expression)USP28
Human Protein AtlasENSG00000048028-USP28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RU2
Splice isoforms : SwissVarQ96RU2
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ96RU2
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Papain-like_cys_pep_sf    Peptidase_C19_UCH    UBA-like_sf    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP28
Blocks (Seattle)USP28
PDB (RSDB)2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
PDB Europe2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
PDB (PDBSum)2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
PDB (IMB)2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
Structural Biology KnowledgeBase2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
SCOP (Structural Classification of Proteins)2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
CATH (Classification of proteins structures)2LVA    2MUU    6H4H    6H4I    6HEH    6HEI    6HEJ    6HEK   
SuperfamilyQ96RU2
Human Protein Atlas [tissue]ENSG00000048028-USP28 [tissue]
Peptide AtlasQ96RU2
HPRD15632
IPIIPI00045496   IPI00103951   IPI01010479   IPI01009333   IPI01014907   IPI01010049   IPI01015583   IPI01013069   IPI01013469   IPI01014203   IPI01013105   IPI01011633   IPI01013753   
Protein Interaction databases
DIP (DOE-UCLA)Q96RU2
IntAct (EBI)Q96RU2
BioGRIDUSP28
STRING (EMBL)USP28
ZODIACUSP28
Ontologies - Pathways
QuickGOQ96RU2
Ontology : AmiGODNA damage checkpoint  DNA damage checkpoint  cysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  DNA repair  ubiquitin-dependent protein catabolic process  cellular response to DNA damage stimulus  Ras protein signal transduction  cell proliferation  response to ionizing radiation  protein deubiquitination  protein deubiquitination  protein deubiquitination  protein deubiquitination  nuclear body  regulation of protein stability  protein-containing complex  cellular response to UV  thiol-dependent ubiquitinyl hydrolase activity  thiol-dependent ubiquitinyl hydrolase activity  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Ontology : EGO-EBIDNA damage checkpoint  DNA damage checkpoint  cysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  DNA repair  ubiquitin-dependent protein catabolic process  cellular response to DNA damage stimulus  Ras protein signal transduction  cell proliferation  response to ionizing radiation  protein deubiquitination  protein deubiquitination  protein deubiquitination  protein deubiquitination  nuclear body  regulation of protein stability  protein-containing complex  cellular response to UV  thiol-dependent ubiquitinyl hydrolase activity  thiol-dependent ubiquitinyl hydrolase activity  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
NDEx NetworkUSP28
Atlas of Cancer Signalling NetworkUSP28
Wikipedia pathwaysUSP28
Orthology - Evolution
OrthoDB57646
GeneTree (enSembl)ENSG00000048028
Phylogenetic Trees/Animal Genes : TreeFamUSP28
HOGENOMQ96RU2
Homologs : HomoloGeneUSP28
Homology/Alignments : Family Browser (UCSC)USP28
Gene fusions - Rearrangements
Fusion : MitelmanSKIV2L2/USP28 [5q11.2/11q23.2]  
Fusion PortalSKIV2L2 5q11.2 USP28 11q23.2 OV
Fusion : QuiverUSP28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP28 [hg38]
dbVarUSP28
ClinVarUSP28
MonarchUSP28
1000_GenomesUSP28 
Exome Variant ServerUSP28
GNOMAD BrowserENSG00000048028
Varsome BrowserUSP28
Genomic Variants (DGV)USP28 [DGVbeta]
DECIPHERUSP28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP28 
Mutations
ICGC Data PortalUSP28 
TCGA Data PortalUSP28 
Broad Tumor PortalUSP28
OASIS PortalUSP28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP28  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSP28
Mutations and Diseases : HGMDUSP28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP28
DgiDB (Drug Gene Interaction Database)USP28
DoCM (Curated mutations)USP28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP28 (select a term)
intoGenUSP28
Cancer3DUSP28(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610748   
Orphanet
DisGeNETUSP28
MedgenUSP28
Genetic Testing Registry USP28
NextProtQ96RU2 [Medical]
GENETestsUSP28
Target ValidationUSP28
Huge Navigator USP28 [HugePedia]
ClinGenUSP28
Clinical trials, drugs, therapy
MyCancerGenomeUSP28
Protein Interactions : CTD
Pharm GKB GenePA37250
PharosQ96RU2
Clinical trialUSP28
Miscellaneous
canSAR (ICR)USP28 (select the gene name)
HarmonizomeUSP28
DataMed IndexUSP28
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSP28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:43:46 CET 2021
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