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USP29 (ubiquitin specific peptidase 29)

Identity

Alias_namesubiquitin specific protease 29
Other aliasHOM-TES-84/86
HGNC (Hugo) USP29
LocusID (NCBI) 57663
Atlas_Id 75553
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57120141 and ends at 57131925 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP29   18563
Cards
Entrez_Gene (NCBI)USP29  57663  ubiquitin specific peptidase 29
AliasesHOM-TES-84/86
GeneCards (Weizmann)USP29
Ensembl hg19 (Hinxton)ENSG00000131864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131864 [Gene_View]  chr19:57120141-57131925 [Contig_View]  USP29 [Vega]
ICGC DataPortalENSG00000131864
TCGA cBioPortalUSP29
AceView (NCBI)USP29
Genatlas (Paris)USP29
WikiGenes57663
SOURCE (Princeton)USP29
Genetics Home Reference (NIH)USP29
Genomic and cartography
GoldenPath hg38 (UCSC)USP29  -     chr19:57120141-57131925 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP29  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblUSP29 - 19q13.43 [CytoView hg19]  USP29 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIUSP29 [Mapview hg19]  USP29 [Mapview hg38]
OMIM609546   
Gene and transcription
Genbank (Entrez)AF124433 AF229438 AK308285 BC130394 BC130398
RefSeq transcript (Entrez)NM_020903
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP29
Cluster EST : UnigeneHs.515632 [ NCBI ]
CGAP (NCI)Hs.515632
Alternative Splicing GalleryENSG00000131864
Gene ExpressionUSP29 [ NCBI-GEO ]   USP29 [ EBI - ARRAY_EXPRESS ]   USP29 [ SEEK ]   USP29 [ MEM ]
Gene Expression Viewer (FireBrowse)USP29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57663
GTEX Portal (Tissue expression)USP29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBJ7
Splice isoforms : SwissVarQ9HBJ7
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ9HBJ7
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP37-like_PH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)    UCH_N (PF16674)   
Domain families : Pfam (NCBI)pfam00443    pfam16674   
Conserved Domain (NCBI)USP29
DMDM Disease mutations57663
Blocks (Seattle)USP29
SuperfamilyQ9HBJ7
Human Protein AtlasENSG00000131864
Peptide AtlasQ9HBJ7
HPRD07163
IPIIPI00011245   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBJ7
IntAct (EBI)Q9HBJ7
FunCoupENSG00000131864
BioGRIDUSP29
STRING (EMBL)USP29
ZODIACUSP29
Ontologies - Pathways
QuickGOQ9HBJ7
Ontology : AmiGOcellular_component  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBIcellular_component  ubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP29
Atlas of Cancer Signalling NetworkUSP29
Wikipedia pathwaysUSP29
Orthology - Evolution
OrthoDB57663
GeneTree (enSembl)ENSG00000131864
Phylogenetic Trees/Animal Genes : TreeFamUSP29
HOVERGENQ9HBJ7
HOGENOMQ9HBJ7
Homologs : HomoloGeneUSP29
Homology/Alignments : Family Browser (UCSC)USP29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP29
dbVarUSP29
ClinVarUSP29
1000_GenomesUSP29 
Exome Variant ServerUSP29
ExAC (Exome Aggregation Consortium)USP29 (select the gene name)
Genetic variants : HAPMAP57663
Genomic Variants (DGV)USP29 [DGVbeta]
DECIPHERUSP29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP29 
Mutations
ICGC Data PortalUSP29 
TCGA Data PortalUSP29 
Broad Tumor PortalUSP29
OASIS PortalUSP29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP29
DgiDB (Drug Gene Interaction Database)USP29
DoCM (Curated mutations)USP29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP29 (select a term)
intoGenUSP29
Cancer3DUSP29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609546   
Orphanet
MedgenUSP29
Genetic Testing Registry USP29
NextProtQ9HBJ7 [Medical]
TSGene57663
GENETestsUSP29
Target ValidationUSP29
Huge Navigator USP29 [HugePedia]
snp3D : Map Gene to Disease57663
BioCentury BCIQUSP29
ClinGenUSP29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57663
Chemical/Pharm GKB GenePA38349
Clinical trialUSP29
Miscellaneous
canSAR (ICR)USP29 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP29
EVEXUSP29
GoPubMedUSP29
iHOPUSP29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:26 CEST 2017

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