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USP31 (ubiquitin specific peptidase 31)

Identity

Alias_namesubiquitin specific protease 31
Alias_symbol (synonym)KIAA1203
Other alias-
HGNC (Hugo) USP31
LocusID (NCBI) 57478
Atlas_Id 54760
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 23072728 and ends at 23160591 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
USP31 (16p12.2) / ARPC2 (2q35)USP31 (16p12.2) / CRYL1 (13q12.11)USP31 (16p12.2) / MKL2 (16p13.12)
USP31 16p12.2 / MKL2 16p13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP31   20060
Cards
Entrez_Gene (NCBI)USP31  57478  ubiquitin specific peptidase 31
Aliases
GeneCards (Weizmann)USP31
Ensembl hg19 (Hinxton)ENSG00000103404 [Gene_View]  chr16:23072728-23160591 [Contig_View]  USP31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103404 [Gene_View]  chr16:23072728-23160591 [Contig_View]  USP31 [Vega]
ICGC DataPortalENSG00000103404
TCGA cBioPortalUSP31
AceView (NCBI)USP31
Genatlas (Paris)USP31
WikiGenes57478
SOURCE (Princeton)USP31
Genetics Home Reference (NIH)USP31
Genomic and cartography
GoldenPath hg19 (UCSC)USP31  -     chr16:23072728-23160591 -  16p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP31  -     16p12.2   [Description]    (hg38-Dec_2013)
EnsemblUSP31 - 16p12.2 [CytoView hg19]  USP31 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIUSP31 [Mapview hg19]  USP31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033029 AJ586135 AK057491 AK092790 AK126447
RefSeq transcript (Entrez)NM_020718
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)USP31
Cluster EST : UnigeneHs.183817 [ NCBI ]
CGAP (NCI)Hs.183817
Alternative Splicing GalleryENSG00000103404
Gene ExpressionUSP31 [ NCBI-GEO ]   USP31 [ EBI - ARRAY_EXPRESS ]   USP31 [ SEEK ]   USP31 [ MEM ]
Gene Expression Viewer (FireBrowse)USP31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57478
GTEX Portal (Tissue expression)USP31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70CQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70CQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70CQ4
Splice isoforms : SwissVarQ70CQ4
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ70CQ4
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP31
DMDM Disease mutations57478
Blocks (Seattle)USP31
SuperfamilyQ70CQ4
Human Protein AtlasENSG00000103404
Peptide AtlasQ70CQ4
HPRD15634
IPIIPI00297289   IPI00445176   
Protein Interaction databases
DIP (DOE-UCLA)Q70CQ4
IntAct (EBI)Q70CQ4
FunCoupENSG00000103404
BioGRIDUSP31
STRING (EMBL)USP31
ZODIACUSP31
Ontologies - Pathways
QuickGOQ70CQ4
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  nucleus  ubiquitin-dependent protein catabolic process  protein deubiquitination  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  nucleus  ubiquitin-dependent protein catabolic process  protein deubiquitination  
NDEx NetworkUSP31
Atlas of Cancer Signalling NetworkUSP31
Wikipedia pathwaysUSP31
Orthology - Evolution
OrthoDB57478
GeneTree (enSembl)ENSG00000103404
Phylogenetic Trees/Animal Genes : TreeFamUSP31
HOVERGENQ70CQ4
HOGENOMQ70CQ4
Homologs : HomoloGeneUSP31
Homology/Alignments : Family Browser (UCSC)USP31
Gene fusions - Rearrangements
Fusion : MitelmanUSP31/CRYL1 [16p12.2/13q12.11]  
Fusion : MitelmanUSP31/MKL2 [16p12.2/16p13.12]  [t(16;16)(p12;p13)]  
Fusion: TCGAUSP31 16p12.2 MKL2 16p13.12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP31
dbVarUSP31
ClinVarUSP31
1000_GenomesUSP31 
Exome Variant ServerUSP31
ExAC (Exome Aggregation Consortium)USP31 (select the gene name)
Genetic variants : HAPMAP57478
Genomic Variants (DGV)USP31 [DGVbeta]
DECIPHER (Syndromes)16:23072728-23160591  ENSG00000103404
CONAN: Copy Number AnalysisUSP31 
Mutations
ICGC Data PortalUSP31 
TCGA Data PortalUSP31 
Broad Tumor PortalUSP31
OASIS PortalUSP31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP31
DgiDB (Drug Gene Interaction Database)USP31
DoCM (Curated mutations)USP31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP31 (select a term)
intoGenUSP31
Cancer3DUSP31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP31
Genetic Testing Registry USP31
NextProtQ70CQ4 [Medical]
TSGene57478
GENETestsUSP31
Huge Navigator USP31 [HugePedia]
snp3D : Map Gene to Disease57478
BioCentury BCIQUSP31
ClinGenUSP31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57478
Chemical/Pharm GKB GenePA164742780
Clinical trialUSP31
Miscellaneous
canSAR (ICR)USP31 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP31
EVEXUSP31
GoPubMedUSP31
iHOPUSP31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:32 CEST 2017

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