Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

USP35 (ubiquitin specific peptidase 35)

Identity

Alias_namesubiquitin specific protease 35
Alias_symbol (synonym)KIAA1372
Other alias-
HGNC (Hugo) USP35
LocusID (NCBI) 57558
Atlas_Id 75558
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 78188812 and ends at 78214711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		ARAP1 (11q13.4) / USP35 (11q14.1)USP35 (11q14.1) / ATAD3A (1p36.33)USP35 (11q14.1) / ATAD3B (1p36.33)
USP35 (11q14.1) / RNF169 (11q13.4)USP35 (11q14.1) / TSHZ2 (20q13.2)USP35 RNF169
USP35 TSHZ2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USP35   20061
Cards
Entrez_Gene (NCBI)USP35  57558  ubiquitin specific peptidase 35
Aliases
GeneCards (Weizmann)USP35
Ensembl hg19 (Hinxton)ENSG00000118369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118369 [Gene_View]  chr11:78188812-78214711 [Contig_View]  USP35 [Vega]
ICGC DataPortalENSG00000118369
TCGA cBioPortalUSP35
AceView (NCBI)USP35
Genatlas (Paris)USP35
WikiGenes57558
SOURCE (Princeton)USP35
Genetics Home Reference (NIH)USP35
Genomic and cartography
GoldenPath hg38 (UCSC)USP35  -     chr11:78188812-78214711 +  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP35  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblUSP35 - 11q14.1 [CytoView hg19]  USP35 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIUSP35 [Mapview hg19]  USP35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037793 AJ586137 AK056231 AK301048 AK307875
RefSeq transcript (Entrez)NM_020798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP35
Cluster EST : UnigeneHs.531249 [ NCBI ]
CGAP (NCI)Hs.531249
Alternative Splicing GalleryENSG00000118369
Gene ExpressionUSP35 [ NCBI-GEO ]   USP35 [ EBI - ARRAY_EXPRESS ]   USP35 [ SEEK ]   USP35 [ MEM ]
Gene Expression Viewer (FireBrowse)USP35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57558
GTEX Portal (Tissue expression)USP35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2H5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2H5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2H5
Splice isoforms : SwissVarQ9P2H5
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ9P2H5
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)ARM-type_fold    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP35
DMDM Disease mutations57558
Blocks (Seattle)USP35
SuperfamilyQ9P2H5
Human Protein AtlasENSG00000118369
Peptide AtlasQ9P2H5
IPIIPI00001726   IPI00973101   IPI00829926   IPI00983344   IPI00982832   IPI00985137   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2H5
IntAct (EBI)Q9P2H5
FunCoupENSG00000118369
BioGRIDUSP35
STRING (EMBL)USP35
ZODIACUSP35
Ontologies - Pathways
QuickGOQ9P2H5
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  ubiquitin-dependent protein catabolic process  protein deubiquitination  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  ubiquitin-dependent protein catabolic process  protein deubiquitination  
NDEx NetworkUSP35
Atlas of Cancer Signalling NetworkUSP35
Wikipedia pathwaysUSP35
Orthology - Evolution
OrthoDB57558
GeneTree (enSembl)ENSG00000118369
Phylogenetic Trees/Animal Genes : TreeFamUSP35
HOVERGENQ9P2H5
HOGENOMQ9P2H5
Homologs : HomoloGeneUSP35
Homology/Alignments : Family Browser (UCSC)USP35
Gene fusions - Rearrangements
Fusion: TCGAUSP35 RNF169
Fusion: TCGAUSP35 TSHZ2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP35
dbVarUSP35
ClinVarUSP35
1000_GenomesUSP35 
Exome Variant ServerUSP35
ExAC (Exome Aggregation Consortium)USP35 (select the gene name)
Genetic variants : HAPMAP57558
Genomic Variants (DGV)USP35 [DGVbeta]
DECIPHERUSP35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP35 
Mutations
ICGC Data PortalUSP35 
TCGA Data PortalUSP35 
Broad Tumor PortalUSP35
OASIS PortalUSP35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP35
DgiDB (Drug Gene Interaction Database)USP35
DoCM (Curated mutations)USP35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP35 (select a term)
intoGenUSP35
Cancer3DUSP35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP35
Genetic Testing Registry USP35
NextProtQ9P2H5 [Medical]
TSGene57558
GENETestsUSP35
Target ValidationUSP35
Huge Navigator USP35 [HugePedia]
snp3D : Map Gene to Disease57558
BioCentury BCIQUSP35
ClinGenUSP35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57558
Chemical/Pharm GKB GenePA134883706
Clinical trialUSP35
Miscellaneous
canSAR (ICR)USP35 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP35
EVEXUSP35
GoPubMedUSP35
iHOPUSP35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:48:26 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.