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USP41 (ubiquitin specific peptidase 41)

Identity

Alias_namesubiquitin specific protease 41
Other alias-
HGNC (Hugo) USP41
LocusID (NCBI) 373856
Atlas_Id 75562
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20363621 and ends at 20428192 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)USP41   20070
Cards
Entrez_Gene (NCBI)USP41  373856  ubiquitin specific peptidase 41
Aliases
GeneCards (Weizmann)USP41
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:20363621-20428192 [Contig_View]  USP41 [Vega]
TCGA cBioPortalUSP41
AceView (NCBI)USP41
Genatlas (Paris)USP41
WikiGenes373856
SOURCE (Princeton)USP41
Genetics Home Reference (NIH)USP41
Genomic and cartography
GoldenPath hg38 (UCSC)USP41  -     chr22:20363621-20428192 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP41  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblUSP41 - 22q11.21 [CytoView hg19]  USP41 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIUSP41 [Mapview hg19]  USP41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ583822 AJ586979 AK303463
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP41
Cluster EST : UnigeneHs.38260 [ NCBI ]
CGAP (NCI)Hs.38260
Gene ExpressionUSP41 [ NCBI-GEO ]   USP41 [ EBI - ARRAY_EXPRESS ]   USP41 [ SEEK ]   USP41 [ MEM ]
Gene Expression Viewer (FireBrowse)USP41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)373856
GTEX Portal (Tissue expression)USP41
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LFD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LFD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LFD5
Splice isoforms : SwissVarQ3LFD5
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ3LFD5
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP41
DMDM Disease mutations373856
Blocks (Seattle)USP41
SuperfamilyQ3LFD5
Peptide AtlasQ3LFD5
IPIIPI00908904   IPI00889160   
Protein Interaction databases
DIP (DOE-UCLA)Q3LFD5
IntAct (EBI)Q3LFD5
BioGRIDUSP41
STRING (EMBL)USP41
ZODIACUSP41
Ontologies - Pathways
QuickGOQ3LFD5
Ontology : AmiGOubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBIubiquitin-dependent protein catabolic process  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP41
Atlas of Cancer Signalling NetworkUSP41
Wikipedia pathwaysUSP41
Orthology - Evolution
OrthoDB373856
Phylogenetic Trees/Animal Genes : TreeFamUSP41
HOVERGENQ3LFD5
HOGENOMQ3LFD5
Homologs : HomoloGeneUSP41
Homology/Alignments : Family Browser (UCSC)USP41
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP41
dbVarUSP41
ClinVarUSP41
1000_GenomesUSP41 
Exome Variant ServerUSP41
ExAC (Exome Aggregation Consortium)USP41 (select the gene name)
Genetic variants : HAPMAP373856
Genomic Variants (DGV)USP41 [DGVbeta]
DECIPHERUSP41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP41 
Mutations
ICGC Data PortalUSP41 
TCGA Data PortalUSP41 
Broad Tumor PortalUSP41
OASIS PortalUSP41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP41
DgiDB (Drug Gene Interaction Database)USP41
DoCM (Curated mutations)USP41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP41 (select a term)
intoGenUSP41
Cancer3DUSP41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP41
Genetic Testing Registry USP41
NextProtQ3LFD5 [Medical]
TSGene373856
GENETestsUSP41
Target ValidationUSP41
Huge Navigator USP41 [HugePedia]
snp3D : Map Gene to Disease373856
BioCentury BCIQUSP41
ClinGenUSP41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD373856
Chemical/Pharm GKB GenePA134876613
Clinical trialUSP41
Miscellaneous
canSAR (ICR)USP41 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP41
EVEXUSP41
GoPubMedUSP41
iHOPUSP41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:27 CEST 2017

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