USP42 (ubiquitin specific peptidase 42)

Identity

Other names	FLJ12697
HGNC	USP42
Location	7p22.2
Location_base_pair	Starts at 6111076 and ends at 6167720 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	USP42   20068
Entrez_Gene	USP42  84132  ubiquitin specific peptidase 42
	Cards
GeneCards	USP42
Ensembl	USP42 [Search_View]   ENSG00000106346 [Gene_View]
Genatlas	USP42
GeneLynx	USP42
eGenome	USP42
euGene	84132
	Genomic and cartography
GoldenPath	USP42  -  7p22.2   chr7:6111076-6167720 +  7p22.1   [Description]    (hg18-March_2006)
Ensembl	USP42 - 7p22.1 [CytoView]
NCBI	Mapview
HomoloGene	USP42
	Gene and transcription
Genbank	AA936550 [ ENTREZ ]
Genbank	AJ601395 [ ENTREZ ]
Genbank	AK022759 [ ENTREZ ]
Genbank	AK301527 [ ENTREZ ]
Genbank	AK309375 [ ENTREZ ]
RefSeq	NM_032172 [ SRS ]    NM_032172 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839002 [ SRS ]    NW_001839002 [ ENTREZ ]
RefSeq	NW_923217 [ SRS ]    NW_923217 [ ENTREZ ]
AceView	USP42 AceView - NCBI
Unigene	Hs.707731 [ SRS ]    Hs.707731 [ NCBI ]     HS707731 [ spliceNest ]
Fast-db	1660 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q0VIN8 [ SRS]    Q0VIN8 [ EXPASY ]     Q0VIN8 [ INTERPRO ]     Q0VIN8 [ UNIPROT ]
Prosite	PS00290 IG_MHC [ SRS ]    PS00290 IG_MHC [ Expasy ]
Prosite	PS00972 UCH_2_1 [ SRS ]    PS00972 UCH_2_1 [ Expasy ]
Prosite	PS00973 UCH_2_2 [ SRS ]    PS00973 UCH_2_2 [ Expasy ]
Prosite	PS50235 UCH_2_3 [ SRS ]    PS50235 UCH_2_3 [ Expasy ]
Interpro	IPR003006 Ig/MHC_CS [ SRS ]    IPR003006 Ig/MHC_CS [ EBI ]
Interpro	IPR001394 Peptidase_C19 [ SRS ]    IPR001394 Peptidase_C19 [ EBI ]
CluSTr	Q0VIN8
Pfam	PF00443 UCH [ SRS ]    PF00443 UCH [ Sanger ]    pfam00443 [ NCBI-CDD ]
Blocks	Q0VIN8
	Protein Interaction databases
DIP	Q0VIN8
IntAct	Q0VIN8
	Polymorphism : SNP, mutations, diseases
SNP	USP42 [dbSNP-NCBI]
SNP	NM_032172 [SNP-NCI]
SNP	USP42 [GeneSNPs - Utah]  USP42] [HGBASE - SRS]
HAPMAP	USP42 [HAPMAP]
COSMIC	USP42 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	ubiquitin [Translocation breakpoints In Cancer]
HGMD	USP42
	General knowledge
Family Browser	USP42 [UCSC Family Browser]
SOURCE	NM_032172
SMD	Hs.707731
SAGE	Hs.707731
GO	ubiquitin thiolesterase activity [Amigo]  ubiquitin thiolesterase activity
GO	ubiquitin-dependent protein catabolic process [Amigo]  ubiquitin-dependent protein catabolic process
GO	cysteine-type peptidase activity [Amigo]  cysteine-type peptidase activity
PubGene	USP42
TreeFam	USP42
CTD	84132 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	USP42 Related clones (RZPD - Berlin)
	PubMed
PubMed	8 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:37:33 2008