Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

USP43 (ubiquitin specific peptidase 43)

Identity

Alias (NCBI)-
HGNC (Hugo) USP43
HGNC Alias symbFLJ30626
HGNC Previous nameubiquitin specific protease 43
LocusID (NCBI) 124739
Atlas_Id 54762
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 9645517 and ends at 9729686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAB6A (11q13.4) / USP43 (17p13.1)USP43 (17p13.1) / CNTLN (9p22.2)USP43 (17p13.1) / ENDOV (17q25.3)
USP43 17p13.1 / ENDOV 17q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)USP43   20072
Cards
Entrez_Gene (NCBI)USP43    ubiquitin specific peptidase 43
Aliases
GeneCards (Weizmann)USP43
Ensembl hg19 (Hinxton)ENSG00000154914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154914 [Gene_View]  ENSG00000154914 [Sequence]  chr17:9645517-9729686 [Contig_View]  USP43 [Vega]
ICGC DataPortalENSG00000154914
TCGA cBioPortalUSP43
AceView (NCBI)USP43
Genatlas (Paris)USP43
SOURCE (Princeton)USP43
Genetics Home Reference (NIH)USP43
Genomic and cartography
GoldenPath hg38 (UCSC)USP43  -     chr17:9645517-9729686 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP43  -     17p13.1   [Description]    (hg19-Feb_2009)
GoldenPathUSP43 - 17p13.1 [CytoView hg19]  USP43 - 17p13.1 [CytoView hg38]
ImmunoBaseENSG00000154914
Genome Data Viewer NCBIUSP43 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ583817 AK055188 AK090821 BC039653 BC136368
RefSeq transcript (Entrez)NM_001267576 NM_153210
Consensus coding sequences : CCDS (NCBI)USP43
Gene ExpressionUSP43 [ NCBI-GEO ]   USP43 [ EBI - ARRAY_EXPRESS ]   USP43 [ SEEK ]   USP43 [ MEM ]
Gene Expression Viewer (FireBrowse)USP43 [ Firebrowse - Broad ]
GenevisibleExpression of USP43 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124739
GTEX Portal (Tissue expression)USP43
Human Protein AtlasENSG00000154914-USP43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70EL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70EL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70EL4
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ70EL4
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Papain-like_cys_pep_sf    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP43
SuperfamilyQ70EL4
AlphaFold pdb e-kbQ70EL4   
Human Protein Atlas [tissue]ENSG00000154914-USP43 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q70EL4
IntAct (EBI)Q70EL4
BioGRIDUSP43
STRING (EMBL)USP43
ZODIACUSP43
Ontologies - Pathways
QuickGOQ70EL4
Ontology : AmiGOthiol-dependent deubiquitinase  nucleoplasm  ubiquitin-dependent protein catabolic process  protein deubiquitination  translesion synthesis  
Ontology : EGO-EBIthiol-dependent deubiquitinase  nucleoplasm  ubiquitin-dependent protein catabolic process  protein deubiquitination  translesion synthesis  
NDEx NetworkUSP43
Atlas of Cancer Signalling NetworkUSP43
Wikipedia pathwaysUSP43
Orthology - Evolution
OrthoDB124739
GeneTree (enSembl)ENSG00000154914
Phylogenetic Trees/Animal Genes : TreeFamUSP43
Homologs : HomoloGeneUSP43
Homology/Alignments : Family Browser (UCSC)USP43
Gene fusions - Rearrangements
Fusion : MitelmanRAB6A/USP43 [11q13.4/17p13.1]  
Fusion : MitelmanUSP43/ENDOV [17p13.1/17q25.3]  
Fusion : QuiverUSP43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP43
dbVarUSP43
ClinVarUSP43
MonarchUSP43
1000_GenomesUSP43 
Exome Variant ServerUSP43
GNOMAD BrowserENSG00000154914
Varsome BrowserUSP43
ACMGUSP43 variants
VarityQ70EL4
Genomic Variants (DGV)USP43 [DGVbeta]
DECIPHERUSP43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP43 
Mutations
ICGC Data PortalUSP43 
TCGA Data PortalUSP43 
Broad Tumor PortalUSP43
OASIS PortalUSP43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP43  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSP43
Mutations and Diseases : HGMDUSP43
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUSP43
DgiDB (Drug Gene Interaction Database)USP43
DoCM (Curated mutations)USP43
CIViC (Clinical Interpretations of Variants in Cancer)USP43
Cancer3DUSP43
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUSP43
MedgenUSP43
Genetic Testing Registry USP43
NextProtQ70EL4 [Medical]
GENETestsUSP43
Target ValidationUSP43
Huge Navigator USP43 [HugePedia]
ClinGenUSP43
Clinical trials, drugs, therapy
MyCancerGenomeUSP43
Protein Interactions : CTDUSP43
Pharm GKB GenePA134865304
PharosQ70EL4
Clinical trialUSP43
Miscellaneous
canSAR (ICR)USP43
HarmonizomeUSP43
DataMed IndexUSP43
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSP43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:37:46 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.