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USP48 (ubiquitin specific peptidase 48)

Identity

Alias (NCBI)RAP1GA1
USP31
HGNC (Hugo) USP48
HGNC Alias symbFLJ23277
FLJ11328
FLJ20103
FLJ23054
MGC14879
HGNC Previous nameUSP31
HGNC Previous nameubiquitin specific protease 31
 ubiquitin specific protease 48
LocusID (NCBI) 84196
Atlas_Id 57481
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 21678299 and ends at 21783149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANXA5 (4q27) / USP48 (1p36.12)CPNE4 (3q22.1) / USP48 (1p36.12)CSMD2 (1p35.1) / USP48 (1p36.12)
RAP1GAP (1p36.12) / USP48 (1p36.12)USP48 (1p36.12) / STPG1 (1p36.11)USP48 (1p36.12) / USP48 (1p36.12)
USP48 (1p36.12) / ZFAND6 (15q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)USP48   18533
Cards
Entrez_Gene (NCBI)USP48    ubiquitin specific peptidase 48
AliasesRAP1GA1; USP31
GeneCards (Weizmann)USP48
Ensembl hg19 (Hinxton)ENSG00000090686 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090686 [Gene_View]  ENSG00000090686 [Sequence]  chr1:21678299-21783149 [Contig_View]  USP48 [Vega]
ICGC DataPortalENSG00000090686
TCGA cBioPortalUSP48
AceView (NCBI)USP48
Genatlas (Paris)USP48
SOURCE (Princeton)USP48
Genetics Home Reference (NIH)USP48
Genomic and cartography
GoldenPath hg38 (UCSC)USP48  -     chr1:21678299-21783149 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP48  -     1p36.12   [Description]    (hg19-Feb_2009)
GoldenPathUSP48 - 1p36.12 [CytoView hg19]  USP48 - 1p36.12 [CytoView hg38]
ImmunoBaseENSG00000090686
Genome Data Viewer NCBIUSP48 [Mapview hg19]  
OMIM617445   
Gene and transcription
Genbank (Entrez)AF502942 AI248244 AK000110 AK002190 AK021830
RefSeq transcript (Entrez)NM_001032730 NM_001330394 NM_001350164 NM_001350166 NM_001350167 NM_001350168 NM_032236
Consensus coding sequences : CCDS (NCBI)USP48
Gene ExpressionUSP48 [ NCBI-GEO ]   USP48 [ EBI - ARRAY_EXPRESS ]   USP48 [ SEEK ]   USP48 [ MEM ]
Gene Expression Viewer (FireBrowse)USP48 [ Firebrowse - Broad ]
GenevisibleExpression of USP48 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84196
GTEX Portal (Tissue expression)USP48
Human Protein AtlasENSG00000090686-USP48 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)USP48
Human Protein Atlas [tissue]ENSG00000090686-USP48 [tissue]
Protein Interaction databases
BioGRIDUSP48
STRING (EMBL)USP48
ZODIACUSP48
Ontologies - Pathways
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSP48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:47 CEST 2021

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