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USP50 (ubiquitin specific peptidase 50)

Identity

Alias_namesubiquitin specific protease 50
Other alias-
HGNC (Hugo) USP50
LocusID (NCBI) 373509
Atlas_Id 75567
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 50792759 and ends at 50838902 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP50   20079
Cards
Entrez_Gene (NCBI)USP50  373509  ubiquitin specific peptidase 50
Aliases
GeneCards (Weizmann)USP50
Ensembl hg19 (Hinxton)ENSG00000170236 [Gene_View]  chr15:50792759-50838902 [Contig_View]  USP50 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170236 [Gene_View]  chr15:50792759-50838902 [Contig_View]  USP50 [Vega]
ICGC DataPortalENSG00000170236
TCGA cBioPortalUSP50
AceView (NCBI)USP50
Genatlas (Paris)USP50
WikiGenes373509
SOURCE (Princeton)USP50
Genetics Home Reference (NIH)USP50
Genomic and cartography
GoldenPath hg19 (UCSC)USP50  -     chr15:50792759-50838902 -  15q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP50  -     15q21.2   [Description]    (hg38-Dec_2013)
EnsemblUSP50 - 15q21.2 [CytoView hg19]  USP50 - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBIUSP50 [Mapview hg19]  USP50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ583818 BC140415 BC146493 BN000339 DB448810
RefSeq transcript (Entrez)NM_203494
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)USP50
Cluster EST : UnigeneHs.677758 [ NCBI ]
CGAP (NCI)Hs.677758
Alternative Splicing GalleryENSG00000170236
Gene ExpressionUSP50 [ NCBI-GEO ]   USP50 [ EBI - ARRAY_EXPRESS ]   USP50 [ SEEK ]   USP50 [ MEM ]
Gene Expression Viewer (FireBrowse)USP50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)373509
GTEX Portal (Tissue expression)USP50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70EL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70EL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70EL3
Splice isoforms : SwissVarQ70EL3
PhosPhoSitePlusQ70EL3
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP50
DMDM Disease mutations373509
Blocks (Seattle)USP50
SuperfamilyQ70EL3
Human Protein AtlasENSG00000170236
Peptide AtlasQ70EL3
HPRD15639
IPIIPI00940487   IPI00982811   
Protein Interaction databases
DIP (DOE-UCLA)Q70EL3
IntAct (EBI)Q70EL3
FunCoupENSG00000170236
BioGRIDUSP50
STRING (EMBL)USP50
ZODIACUSP50
Ontologies - Pathways
QuickGOQ70EL3
Ontology : AmiGOSAGA complex  cysteine-type endopeptidase activity  ubiquitin-specific protease activity  regulation of transcription, DNA-templated  histone deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
Ontology : EGO-EBISAGA complex  cysteine-type endopeptidase activity  ubiquitin-specific protease activity  regulation of transcription, DNA-templated  histone deubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  
NDEx NetworkUSP50
Atlas of Cancer Signalling NetworkUSP50
Wikipedia pathwaysUSP50
Orthology - Evolution
OrthoDB373509
GeneTree (enSembl)ENSG00000170236
Phylogenetic Trees/Animal Genes : TreeFamUSP50
HOVERGENQ70EL3
HOGENOMQ70EL3
Homologs : HomoloGeneUSP50
Homology/Alignments : Family Browser (UCSC)USP50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP50
dbVarUSP50
ClinVarUSP50
1000_GenomesUSP50 
Exome Variant ServerUSP50
ExAC (Exome Aggregation Consortium)USP50 (select the gene name)
Genetic variants : HAPMAP373509
Genomic Variants (DGV)USP50 [DGVbeta]
DECIPHER (Syndromes)15:50792759-50838902  ENSG00000170236
CONAN: Copy Number AnalysisUSP50 
Mutations
ICGC Data PortalUSP50 
TCGA Data PortalUSP50 
Broad Tumor PortalUSP50
OASIS PortalUSP50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP50
DgiDB (Drug Gene Interaction Database)USP50
DoCM (Curated mutations)USP50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP50 (select a term)
intoGenUSP50
Cancer3DUSP50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP50
Genetic Testing Registry USP50
NextProtQ70EL3 [Medical]
TSGene373509
GENETestsUSP50
Huge Navigator USP50 [HugePedia]
snp3D : Map Gene to Disease373509
BioCentury BCIQUSP50
ClinGenUSP50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD373509
Chemical/Pharm GKB GenePA134916583
Clinical trialUSP50
Miscellaneous
canSAR (ICR)USP50 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP50
EVEXUSP50
GoPubMedUSP50
iHOPUSP50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:06 CET 2017

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