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USP54 (ubiquitin specific peptidase 54)

Identity

Alias (NCBI)C10orf29
bA137L10.3
bA137L10.4
HGNC (Hugo) USP54
HGNC Alias symbFLJ37318
bA137L10.3
bA137L10.4
HGNC Previous nameC10orf29
HGNC Previous namechromosome 10 open reading frame 29
 ubiquitin specific protease 54
LocusID (NCBI) 159195
Atlas_Id 57279
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73497538 and ends at 73575675 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA0232 (4p16.1) / USP54 (10q22.2)MYO1E (15q22.2) / USP54 (10q22.2)SAP18 (13q12.11) / USP54 (10q22.2)
USP54 (10q22.2) / ITGA3 (17q21.33)USP54 (10q22.2) / MLLT10 (10p12.31)USP54 (10q22.2) / PARP11 (12p13.32)
USP54 (10q22.2) / PCDH15 (10q21.1)USP54 (10q22.2) / USP54 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)USP54   23513
Cards
Entrez_Gene (NCBI)USP54    ubiquitin specific peptidase 54
AliasesC10orf29; bA137L10.3; bA137L10.4
GeneCards (Weizmann)USP54
Ensembl hg19 (Hinxton)ENSG00000166348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166348 [Gene_View]  ENSG00000166348 [Sequence]  chr10:73497538-73575675 [Contig_View]  USP54 [Vega]
ICGC DataPortalENSG00000166348
TCGA cBioPortalUSP54
AceView (NCBI)USP54
Genatlas (Paris)USP54
SOURCE (Princeton)USP54
Genetics Home Reference (NIH)USP54
Genomic and cartography
GoldenPath hg38 (UCSC)USP54  -     chr10:73497538-73575675 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP54  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathUSP54 - 10q22.2 [CytoView hg19]  USP54 - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000166348
Genome Data Viewer NCBIUSP54 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ583820 AK094637 AK123711 AK126497 AK127213
RefSeq transcript (Entrez)NM_001320437 NM_001320441 NM_001350995 NM_001378208 NM_001378209 NM_001378210 NM_001391941 NM_001391942 NM_001391945 NM_001391946 NM_001391947 NM_001391948 NM_001391949 NM_001391950 NM_001391951 NM_001391952 NM_001391953 NM_001391954 NM_001391955 NM_001391956 NM_152586
Consensus coding sequences : CCDS (NCBI)USP54
Gene ExpressionUSP54 [ NCBI-GEO ]   USP54 [ EBI - ARRAY_EXPRESS ]   USP54 [ SEEK ]   USP54 [ MEM ]
Gene Expression Viewer (FireBrowse)USP54 [ Firebrowse - Broad ]
GenevisibleExpression of USP54 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159195
GTEX Portal (Tissue expression)USP54
Human Protein AtlasENSG00000166348-USP54 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)USP54
Human Protein Atlas [tissue]ENSG00000166348-USP54 [tissue]
Protein Interaction databases
BioGRIDUSP54
STRING (EMBL)USP54
ZODIACUSP54
Ontologies - Pathways
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSP54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:47 CEST 2021

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