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USP54 (ubiquitin specific peptidase 54)

Identity

Alias_namesC10orf29
chromosome 10 open reading frame 29
ubiquitin specific protease 54
Alias_symbol (synonym)FLJ37318
bA137L10.3
bA137L10.4
Other alias
HGNC (Hugo) USP54
LocusID (NCBI) 159195
Atlas_Id 75570
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73497538 and ends at 73591350 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIAA0232 (4p16.1) / USP54 (10q22.2)MYO1E (15q22.2) / USP54 (10q22.2)SAP18 (13q12.11) / USP54 (10q22.2)
USP54 (10q22.2) / ITGA3 (17q21.33)USP54 (10q22.2) / MLLT10 (10p12.31)USP54 (10q22.2) / PARP11 (12p13.32)
USP54 (10q22.2) / PCDH15 (10q21.1)USP54 (10q22.2) / USP54 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP54   23513
Cards
Entrez_Gene (NCBI)USP54  159195  ubiquitin specific peptidase 54
AliasesC10orf29; bA137L10.3; bA137L10.4
GeneCards (Weizmann)USP54
Ensembl hg19 (Hinxton)ENSG00000166348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166348 [Gene_View]  chr10:73497538-73591350 [Contig_View]  USP54 [Vega]
ICGC DataPortalENSG00000166348
TCGA cBioPortalUSP54
AceView (NCBI)USP54
Genatlas (Paris)USP54
WikiGenes159195
SOURCE (Princeton)USP54
Genetics Home Reference (NIH)USP54
Genomic and cartography
GoldenPath hg38 (UCSC)USP54  -     chr10:73497538-73591350 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP54  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblUSP54 - 10q22.2 [CytoView hg19]  USP54 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIUSP54 [Mapview hg19]  USP54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ583820 AK094637 AK123711 AK126497 AK127213
RefSeq transcript (Entrez)NM_001320437 NM_001320441 NM_001350995 NM_152586
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP54
Cluster EST : UnigeneHs.712514 [ NCBI ]
CGAP (NCI)Hs.712514
Alternative Splicing GalleryENSG00000166348
Gene ExpressionUSP54 [ NCBI-GEO ]   USP54 [ EBI - ARRAY_EXPRESS ]   USP54 [ SEEK ]   USP54 [ MEM ]
Gene Expression Viewer (FireBrowse)USP54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159195
GTEX Portal (Tissue expression)USP54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70EL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70EL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70EL1
Splice isoforms : SwissVarQ70EL1
PhosPhoSitePlusQ70EL1
Domaine pattern : Prosite (Expaxy)USP_3 (PS50235)   
Domains : Interpro (EBI)MIT    Peptidase_C19_UCH    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP54
DMDM Disease mutations159195
Blocks (Seattle)USP54
SuperfamilyQ70EL1
Human Protein AtlasENSG00000166348
Peptide AtlasQ70EL1
HPRD15641
IPIIPI00877069   IPI00903012   IPI00852605   IPI00914881   IPI00642778   IPI00942140   IPI00643427   IPI00852839   IPI00853577   IPI00940456   
Protein Interaction databases
DIP (DOE-UCLA)Q70EL1
IntAct (EBI)Q70EL1
FunCoupENSG00000166348
BioGRIDUSP54
STRING (EMBL)USP54
ZODIACUSP54
Ontologies - Pathways
QuickGOQ70EL1
Ontology : AmiGOprotein binding  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBIprotein binding  protein deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkUSP54
Atlas of Cancer Signalling NetworkUSP54
Wikipedia pathwaysUSP54
Orthology - Evolution
OrthoDB159195
GeneTree (enSembl)ENSG00000166348
Phylogenetic Trees/Animal Genes : TreeFamUSP54
HOVERGENQ70EL1
HOGENOMQ70EL1
Homologs : HomoloGeneUSP54
Homology/Alignments : Family Browser (UCSC)USP54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP54
dbVarUSP54
ClinVarUSP54
1000_GenomesUSP54 
Exome Variant ServerUSP54
ExAC (Exome Aggregation Consortium)USP54 (select the gene name)
Genetic variants : HAPMAP159195
Genomic Variants (DGV)USP54 [DGVbeta]
DECIPHERUSP54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP54 
Mutations
ICGC Data PortalUSP54 
TCGA Data PortalUSP54 
Broad Tumor PortalUSP54
OASIS PortalUSP54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSP54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP54
DgiDB (Drug Gene Interaction Database)USP54
DoCM (Curated mutations)USP54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP54 (select a term)
intoGenUSP54
Cancer3DUSP54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSP54
Genetic Testing Registry USP54
NextProtQ70EL1 [Medical]
TSGene159195
GENETestsUSP54
Target ValidationUSP54
Huge Navigator USP54 [HugePedia]
snp3D : Map Gene to Disease159195
BioCentury BCIQUSP54
ClinGenUSP54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159195
Chemical/Pharm GKB GenePA134959960
Clinical trialUSP54
Miscellaneous
canSAR (ICR)USP54 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP54
EVEXUSP54
GoPubMedUSP54
iHOPUSP54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:43:28 CEST 2017

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