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USP6NL (USP6 N-terminal like)

Identity

Alias (NCBI)RNTRE
TRE2NL
USP6NL-IT1
HGNC (Hugo) USP6NL
HGNC Alias symbRNTRE
KIAA0019
TRE2NL
RN-tre
HGNC Alias namerelated to the N terminus of tre
HGNC Previous nameUSP6NL-IT1
HGNC Previous nameUSP6NL intronic transcript 1 (non-protein coding)
LocusID (NCBI) 9712
Atlas_Id 55954
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11453946 and ends at 11611650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
USP6NL (10p14) / ARMC3 (10p12.2)USP6NL (10p14) / CCDC3 (10p13)USP6NL (10p14) / FAM107B (10p13)
USP6NL (10p14) / GPHN (14q23.3)USP6NL (10p14) / GRB2 (17q25.1)USP6NL (10p14) / MCOLN1 (19p13.2)
USP6NL (10p14) / SPIN1 (9q22.1)USP6NL (10p14) / UPF2 (10p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)USP6NL   16858
Cards
Entrez_Gene (NCBI)USP6NL    USP6 N-terminal like
AliasesRNTRE; TRE2NL; USP6NL-IT1
GeneCards (Weizmann)USP6NL
Ensembl hg19 (Hinxton)ENSG00000148429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148429 [Gene_View]  ENSG00000148429 [Sequence]  chr10:11453946-11611650 [Contig_View]  USP6NL [Vega]
ICGC DataPortalENSG00000148429
TCGA cBioPortalUSP6NL
AceView (NCBI)USP6NL
Genatlas (Paris)USP6NL
SOURCE (Princeton)USP6NL
Genetics Home Reference (NIH)USP6NL
Genomic and cartography
GoldenPath hg38 (UCSC)USP6NL  -     chr10:11453946-11611650 -  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP6NL  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathUSP6NL - 10p14 [CytoView hg19]  USP6NL - 10p14 [CytoView hg38]
ImmunoBaseENSG00000148429
Genome Data Viewer NCBIUSP6NL [Mapview hg19]  
OMIM605405   
Gene and transcription
Genbank (Entrez)AA741061 AB449916 AK091487 AK292944 AK311094
RefSeq transcript (Entrez)NM_001080491 NM_001391959 NM_001391960 NM_001391961 NM_014688
Consensus coding sequences : CCDS (NCBI)USP6NL
Gene ExpressionUSP6NL [ NCBI-GEO ]   USP6NL [ EBI - ARRAY_EXPRESS ]   USP6NL [ SEEK ]   USP6NL [ MEM ]
Gene Expression Viewer (FireBrowse)USP6NL [ Firebrowse - Broad ]
GenevisibleExpression of USP6NL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9712
GTEX Portal (Tissue expression)USP6NL
Human Protein AtlasENSG00000148429-USP6NL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92738   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92738  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92738
PhosPhoSitePlusQ92738
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)USP6NL
SuperfamilyQ92738
AlphaFold pdb e-kbQ92738   
Human Protein Atlas [tissue]ENSG00000148429-USP6NL [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q92738
IntAct (EBI)Q92738
BioGRIDUSP6NL
STRING (EMBL)USP6NL
ZODIACUSP6NL
Ontologies - Pathways
QuickGOQ92738
Ontology : AmiGOGTPase activator activity  GTPase activator activity  cytosol  plasma membrane  intracellular protein transport  Golgi organization  virion assembly  small GTPase binding  cytoplasmic vesicle  cytoplasmic vesicle  trans-Golgi network membrane  retrograde transport, plasma membrane to Golgi  positive regulation of GTPase activity  plasma membrane to endosome transport  activation of GTPase activity  regulation of cilium assembly  regulation of Golgi organization  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  cytosol  plasma membrane  intracellular protein transport  Golgi organization  virion assembly  small GTPase binding  cytoplasmic vesicle  cytoplasmic vesicle  trans-Golgi network membrane  retrograde transport, plasma membrane to Golgi  positive regulation of GTPase activity  plasma membrane to endosome transport  activation of GTPase activity  regulation of cilium assembly  regulation of Golgi organization  
NDEx NetworkUSP6NL
Atlas of Cancer Signalling NetworkUSP6NL
Wikipedia pathwaysUSP6NL
Orthology - Evolution
OrthoDB9712
GeneTree (enSembl)ENSG00000148429
Phylogenetic Trees/Animal Genes : TreeFamUSP6NL
Homologs : HomoloGeneUSP6NL
Homology/Alignments : Family Browser (UCSC)USP6NL
Gene fusions - Rearrangements
Fusion : QuiverUSP6NL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP6NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP6NL
dbVarUSP6NL
ClinVarUSP6NL
MonarchUSP6NL
1000_GenomesUSP6NL 
Exome Variant ServerUSP6NL
GNOMAD BrowserENSG00000148429
Varsome BrowserUSP6NL
ACMGUSP6NL variants
VarityQ92738
Genomic Variants (DGV)USP6NL [DGVbeta]
DECIPHERUSP6NL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP6NL 
Mutations
ICGC Data PortalUSP6NL 
TCGA Data PortalUSP6NL 
Broad Tumor PortalUSP6NL
OASIS PortalUSP6NL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP6NL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSP6NL
Mutations and Diseases : HGMDUSP6NL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUSP6NL
DgiDB (Drug Gene Interaction Database)USP6NL
DoCM (Curated mutations)USP6NL
CIViC (Clinical Interpretations of Variants in Cancer)USP6NL
Cancer3DUSP6NL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605405   
Orphanet
DisGeNETUSP6NL
MedgenUSP6NL
Genetic Testing Registry USP6NL
NextProtQ92738 [Medical]
GENETestsUSP6NL
Target ValidationUSP6NL
Huge Navigator USP6NL [HugePedia]
ClinGenUSP6NL
Clinical trials, drugs, therapy
MyCancerGenomeUSP6NL
Protein Interactions : CTDUSP6NL
Pharm GKB GenePA134955568
PharosQ92738
Clinical trialUSP6NL
Miscellaneous
canSAR (ICR)USP6NL
HarmonizomeUSP6NL
DataMed IndexUSP6NL
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUSP6NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:48 CEST 2021
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