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USP9Y (ubiquitin specific peptidase 9, Y-linked)

Identity

Other namesDFFRY
SPGFY2
HGNC (Hugo) USP9Y
LocusID (NCBI) 8287
Location Yq11.21
Location_base_pair Starts at 14813160 and ends at 14972768 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USP9Y   12633
Cards
Entrez_Gene (NCBI)USP9Y  8287  ubiquitin specific peptidase 9, Y-linked
GeneCards (Weizmann)USP9Y
Ensembl (Hinxton)ENSG00000114374 [Gene_View]  chrY:14813160-14972768 [Contig_View]  USP9Y [Vega]
ICGC DataPortalENSG00000114374
AceView (NCBI)USP9Y
Genatlas (Paris)USP9Y
WikiGenes8287
SOURCE (Princeton)NM_004654
Genomic and cartography
GoldenPath (UCSC)USP9Y  -  Yq11.21   chrY:14813160-14972768 +  Yq11.21   [Description]    (hg19-Feb_2009)
EnsemblUSP9Y - Yq11.21 [CytoView]
Mapping of homologs : NCBIUSP9Y [Mapview]
OMIM400005   415000   
Gene and transcription
Genbank (Entrez)AF000986 AK057605 BC156544 BI754571 CK823170
RefSeq transcript (Entrez)NM_004654
RefSeq genomic (Entrez)AC_000156 NC_000024 NG_008311 NT_011875 NW_001842435
Consensus coding sequences : CCDS (NCBI)USP9Y
Cluster EST : UnigeneHs.598540 [ NCBI ]
CGAP (NCI)Hs.598540
Alternative Splicing : Fast-db (Paris)GSHG0032478
Alternative Splicing GalleryENSG00000114374
Gene ExpressionUSP9Y [ NCBI-GEO ]     USP9Y [ SEEK ]   USP9Y [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00507 (Uniprot)
NextProtO00507  [Medical]
With graphics : InterProO00507
Splice isoforms : SwissVarO00507 (Swissvar)
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)ARM-type_fold    Pept_C19ubi-hydrolase_C_CS    Peptidase_C19_UCH    UCH/PAN2   
Related proteins : CluSTrO00507
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
DMDM Disease mutations8287
Blocks (Seattle)O00507
Human Protein AtlasENSG00000114374
Peptide AtlasO00507
HPRD02449
IPIIPI00874074   IPI00744575   IPI00642334   
Protein Interaction databases
DIP (DOE-UCLA)O00507
IntAct (EBI)O00507
FunCoupENSG00000114374
BioGRIDUSP9Y
IntegromeDBUSP9Y
STRING (EMBL)USP9Y
Ontologies - Pathways
QuickGOO00507
Ontology : AmiGOubiquitin-specific protease activity  cytoplasm  ubiquitin-dependent protein catabolic process  transforming growth factor beta receptor signaling pathway  spermatogenesis  cysteine-type peptidase activity  protein deubiquitination  BMP signaling pathway  co-SMAD binding  
Ontology : EGO-EBIubiquitin-specific protease activity  cytoplasm  ubiquitin-dependent protein catabolic process  transforming growth factor beta receptor signaling pathway  spermatogenesis  cysteine-type peptidase activity  protein deubiquitination  BMP signaling pathway  co-SMAD binding  
Protein Interaction DatabaseUSP9Y
Wikipedia pathwaysUSP9Y
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)USP9Y
SNP (GeneSNP Utah)USP9Y
SNP : HGBaseUSP9Y
Genetic variants : HAPMAPUSP9Y
1000_GenomesUSP9Y 
ICGC programENSG00000114374 
CONAN: Copy Number AnalysisUSP9Y 
Somatic Mutations in Cancer : COSMICUSP9Y 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)Y:14813160-14972768
Mutations and Diseases : HGMDUSP9Y
OMIM400005    415000   
MedgenUSP9Y
GENETestsUSP9Y
Disease Genetic AssociationUSP9Y
Huge Navigator USP9Y [HugePedia]  USP9Y [HugeCancerGEM]
Genomic VariantsUSP9Y  USP9Y [DGVbeta]
Exome VariantUSP9Y
dbVarUSP9Y
ClinVarUSP9Y
snp3D : Map Gene to Disease8287
General knowledge
Homologs : HomoloGeneUSP9Y
Homology/Alignments : Family Browser (UCSC)USP9Y
Phylogenetic Trees/Animal Genes : TreeFamUSP9Y
Chemical/Protein Interactions : CTD8287
Chemical/Pharm GKB GenePA37258
Clinical trialUSP9Y
Cancer Resource (Charite)ENSG00000114374
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
CoreMineUSP9Y
GoPubMedUSP9Y
iHOPUSP9Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 18:05:01 CET 2014

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