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USP9Y (ubiquitin specific peptidase 9, Y-linked)

Identity

Other namesDFFRY
SPGFY2
HGNC (Hugo) USP9Y
LocusID (NCBI) 8287
Atlas_Id 46459
Location Yq11.21
Location_base_pair Starts at 14813160 and ends at 14972768 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USP9Y   12633
Cards
Entrez_Gene (NCBI)USP9Y  8287  ubiquitin specific peptidase 9, Y-linked
GeneCards (Weizmann)USP9Y
Ensembl hg19 (Hinxton)ENSG00000114374 [Gene_View]  chrY:14813160-14972768 [Contig_View]  USP9Y [Vega]
Ensembl hg38 (Hinxton)ENSG00000114374 [Gene_View]  chrY:14813160-14972768 [Contig_View]  USP9Y [Vega]
ICGC DataPortalENSG00000114374
TCGA cBioPortalUSP9Y
AceView (NCBI)USP9Y
Genatlas (Paris)USP9Y
WikiGenes8287
SOURCE (Princeton)USP9Y
Genomic and cartography
GoldenPath hg19 (UCSC)USP9Y  -     chrY:14813160-14972768 +  Yq11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP9Y  -     Yq11.21   [Description]    (hg38-Dec_2013)
EnsemblUSP9Y - Yq11.21 [CytoView hg19]  USP9Y - Yq11.21 [CytoView hg38]
Mapping of homologs : NCBIUSP9Y [Mapview hg19]  USP9Y [Mapview hg38]
OMIM400005   415000   
Gene and transcription
Genbank (Entrez)AF000986 AK057605 BC156544 BI754571 CK823170
RefSeq transcript (Entrez)NM_004654
RefSeq genomic (Entrez)NC_000024 NG_008311 NT_011875
Consensus coding sequences : CCDS (NCBI)USP9Y
Cluster EST : UnigeneHs.598540 [ NCBI ]
CGAP (NCI)Hs.598540
Alternative Splicing : Fast-db (Paris)GSHG0032478
Alternative Splicing GalleryENSG00000114374
Gene ExpressionUSP9Y [ NCBI-GEO ]     USP9Y [ SEEK ]   USP9Y [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00507 (Uniprot)
NextProtO00507  [Medical]
With graphics : InterProO00507
Splice isoforms : SwissVarO00507 (Swissvar)
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)ARM-type_fold    Peptidase_C19_UCH    USP_CS    USP_dom   
Related proteins : CluSTrO00507
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
DMDM Disease mutations8287
Blocks (Seattle)O00507
Human Protein AtlasENSG00000114374
Peptide AtlasO00507
HPRD02449
IPIIPI00874074   IPI00744575   IPI00642334   
Protein Interaction databases
DIP (DOE-UCLA)O00507
IntAct (EBI)O00507
FunCoupENSG00000114374
BioGRIDUSP9Y
IntegromeDBUSP9Y
STRING (EMBL)USP9Y
Ontologies - Pathways
QuickGOO00507
Ontology : AmiGOcysteine-type endopeptidase activity  ubiquitin-specific protease activity  cytoplasm  cytoplasm  transforming growth factor beta receptor signaling pathway  spermatogenesis  cysteine-type peptidase activity  cell migration  protein deubiquitination  protein deubiquitination  BMP signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  co-SMAD binding  
Ontology : EGO-EBIcysteine-type endopeptidase activity  ubiquitin-specific protease activity  cytoplasm  cytoplasm  transforming growth factor beta receptor signaling pathway  spermatogenesis  cysteine-type peptidase activity  cell migration  protein deubiquitination  protein deubiquitination  BMP signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of proteasomal protein catabolic process  co-SMAD binding  
Protein Interaction DatabaseUSP9Y
DoCM (Curated mutations)USP9Y
Wikipedia pathwaysUSP9Y
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerUSP9Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP9Y
dbVarUSP9Y
ClinVarUSP9Y
1000_GenomesUSP9Y 
Exome Variant ServerUSP9Y
SNP (GeneSNP Utah)USP9Y
SNP : HGBaseUSP9Y
Genetic variants : HAPMAPUSP9Y
Genomic Variants (DGV)USP9Y [DGVbeta]
Mutations
ICGC Data PortalUSP9Y 
TCGA Data PortalUSP9Y 
Tumor PortalUSP9Y
Somatic Mutations in Cancer : COSMICUSP9Y 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)Y:14813160-14972768
CONAN: Copy Number AnalysisUSP9Y 
Mutations and Diseases : HGMDUSP9Y
OMIM400005    415000   
MedgenUSP9Y
NextProtO00507 [Medical]
GENETestsUSP9Y
Disease Genetic AssociationUSP9Y
Huge Navigator USP9Y [HugePedia]  USP9Y [HugeCancerGEM]
snp3D : Map Gene to Disease8287
DGIdb (Drug Gene Interaction db)USP9Y
General knowledge
Homologs : HomoloGeneUSP9Y
Homology/Alignments : Family Browser (UCSC)USP9Y
Phylogenetic Trees/Animal Genes : TreeFamUSP9Y
Chemical/Protein Interactions : CTD8287
Chemical/Pharm GKB GenePA37258
Clinical trialUSP9Y
Cancer Resource (Charite)ENSG00000114374
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
CoreMineUSP9Y
GoPubMedUSP9Y
iHOPUSP9Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:30:06 CEST 2015

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