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USP9Y (ubiquitin specific peptidase 9, Y-linked)

Identity

Other namesDFFRY
SPGFY2
HGNC (Hugo) USP9Y
LocusID (NCBI) 8287
Atlas_Id 46459
Location Yq11.21
Location_base_pair Starts at 14813160 and ends at 14972768 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANK3 (10q21.2) / USP9Y (Yq11.21)TTTY15 (Yq11.21) / USP9Y (Yq11.21)USP9Y (Yq11.21) / TTTY15 (Yq11.21)
ANK3 10q21.2 / USP9Y Yq11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USP9Y   12633
Cards
Entrez_Gene (NCBI)USP9Y  8287  ubiquitin specific peptidase 9, Y-linked
GeneCards (Weizmann)USP9Y
Ensembl hg19 (Hinxton)ENSG00000114374 [Gene_View]  chrY:14813160-14972768 [Contig_View]  USP9Y [Vega]
Ensembl hg38 (Hinxton)ENSG00000114374 [Gene_View]  chrY:14813160-14972768 [Contig_View]  USP9Y [Vega]
ICGC DataPortalENSG00000114374
TCGA cBioPortalUSP9Y
AceView (NCBI)USP9Y
Genatlas (Paris)USP9Y
WikiGenes8287
SOURCE (Princeton)USP9Y
Genomic and cartography
GoldenPath hg19 (UCSC)USP9Y  -     chrY:14813160-14972768 +  Yq11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USP9Y  -     Yq11.21   [Description]    (hg38-Dec_2013)
EnsemblUSP9Y - Yq11.21 [CytoView hg19]  USP9Y - Yq11.21 [CytoView hg38]
Mapping of homologs : NCBIUSP9Y [Mapview hg19]  USP9Y [Mapview hg38]
OMIM400005   415000   
Gene and transcription
Genbank (Entrez)AF000986 AK057605 BC156544 BI754571 CK823170
RefSeq transcript (Entrez)NM_004654
RefSeq genomic (Entrez)NC_000024 NG_008311 NT_011875
Consensus coding sequences : CCDS (NCBI)USP9Y
Cluster EST : UnigeneHs.598540 [ NCBI ]
CGAP (NCI)Hs.598540
Alternative Splicing : Fast-db (Paris)GSHG0032478
Alternative Splicing GalleryENSG00000114374
Gene ExpressionUSP9Y [ NCBI-GEO ]   USP9Y [ EBI - ARRAY_EXPRESS ]   USP9Y [ SEEK ]   USP9Y [ MEM ]
Gene Expression Viewer (FireBrowse)USP9Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8287
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00507 (Uniprot)
NextProtO00507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00507
Splice isoforms : SwissVarO00507 (Swissvar)
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusO00507
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)ARM-type_fold    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
DMDM Disease mutations8287
Blocks (Seattle)USP9Y
SuperfamilyO00507
Human Protein AtlasENSG00000114374
Peptide AtlasO00507
HPRD02449
IPIIPI00874074   IPI00744575   IPI00642334   
Protein Interaction databases
DIP (DOE-UCLA)O00507
IntAct (EBI)O00507
FunCoupENSG00000114374
BioGRIDUSP9Y
STRING (EMBL)USP9Y
ZODIACUSP9Y
Ontologies - Pathways
QuickGOO00507
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  cytoplasm  cytoplasm  ubiquitin-dependent protein catabolic process  transforming growth factor beta receptor signaling pathway  spermatogenesis  cysteine-type peptidase activity  cell migration  protein deubiquitination  BMP signaling pathway  co-SMAD binding  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  cytoplasm  cytoplasm  ubiquitin-dependent protein catabolic process  transforming growth factor beta receptor signaling pathway  spermatogenesis  cysteine-type peptidase activity  cell migration  protein deubiquitination  BMP signaling pathway  co-SMAD binding  
NDEx Network
Atlas of Cancer Signalling NetworkUSP9Y
Wikipedia pathwaysUSP9Y
Orthology - Evolution
OrthoDB8287
GeneTree (enSembl)ENSG00000114374
Phylogenetic Trees/Animal Genes : TreeFamUSP9Y
Homologs : HomoloGeneUSP9Y
Homology/Alignments : Family Browser (UCSC)USP9Y
Gene fusions - Rearrangements
Fusion: TCGAANK3 10q21.2 USP9Y Yq11.21 PRAD
Polymorphisms : SNP, variants
NCBI Variation ViewerUSP9Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP9Y
dbVarUSP9Y
ClinVarUSP9Y
1000_GenomesUSP9Y 
Exome Variant ServerUSP9Y
ExAC (Exome Aggregation Consortium)USP9Y (select the gene name)
SNP (GeneSNP Utah)USP9Y
SNP : HGBaseUSP9Y
Genetic variants : HAPMAPUSP9Y
Genomic Variants (DGV)USP9Y [DGVbeta]
Mutations
ICGC Data PortalUSP9Y 
TCGA Data PortalUSP9Y 
Broad Tumor PortalUSP9Y
OASIS PortalUSP9Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP9Y 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USP9Y
DgiDB (Drug Gene Interaction Database)USP9Y
DoCM (Curated mutations)USP9Y (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP9Y (select a term)
intoGenUSP9Y
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)Y:14813160-14972768
CONAN: Copy Number AnalysisUSP9Y 
Mutations and Diseases : HGMDUSP9Y
OMIM400005    415000   
MedgenUSP9Y
Genetic Testing Registry USP9Y
NextProtO00507 [Medical]
TSGene8287
GENETestsUSP9Y
Huge Navigator USP9Y [HugePedia]  USP9Y [HugeCancerGEM]
snp3D : Map Gene to Disease8287
BioCentury BCIQUSP9Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8287
Chemical/Pharm GKB GenePA37258
Clinical trialUSP9Y
Miscellaneous
canSAR (ICR)USP9Y (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP9Y
GoPubMedUSP9Y
iHOPUSP9Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:09:35 CEST 2016

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