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USPL1 (ubiquitin specific peptidase like 1)

Identity

Alias_namesC13orf22
chromosome 13 open reading frame 22
Alias_symbol (synonym)bA121O19.1
D13S106E
Other alias
HGNC (Hugo) USPL1
LocusID (NCBI) 10208
Atlas_Id 53740
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 31191830 and ends at 31233686 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HSPH1 (13q12.3) / USPL1 (13q12.3)USPL1 (13q12.3) / IGSF8 (1q23.2)USPL1 13q12.3 / IGSF8 1q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USPL1   20294
Cards
Entrez_Gene (NCBI)USPL1  10208  ubiquitin specific peptidase like 1
AliasesC13orf22; D13S106E; bA121O19.1
GeneCards (Weizmann)USPL1
Ensembl hg19 (Hinxton)ENSG00000132952 [Gene_View]  chr13:31191830-31233686 [Contig_View]  USPL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132952 [Gene_View]  chr13:31191830-31233686 [Contig_View]  USPL1 [Vega]
ICGC DataPortalENSG00000132952
TCGA cBioPortalUSPL1
AceView (NCBI)USPL1
Genatlas (Paris)USPL1
WikiGenes10208
SOURCE (Princeton)USPL1
Genetics Home Reference (NIH)USPL1
Genomic and cartography
GoldenPath hg19 (UCSC)USPL1  -     chr13:31191830-31233686 +  13q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)USPL1  -     13q12.3   [Description]    (hg38-Dec_2013)
EnsemblUSPL1 - 13q12.3 [CytoView hg19]  USPL1 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBIUSPL1 [Mapview hg19]  USPL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057514 AK289826 AL832776 BC012594 BC036027
RefSeq transcript (Entrez)NM_001321532 NM_001321533 NM_001321534 NM_005800
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)USPL1
Cluster EST : UnigeneHs.533831 [ NCBI ]
CGAP (NCI)Hs.533831
Alternative Splicing GalleryENSG00000132952
Gene ExpressionUSPL1 [ NCBI-GEO ]   USPL1 [ EBI - ARRAY_EXPRESS ]   USPL1 [ SEEK ]   USPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)USPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10208
GTEX Portal (Tissue expression)USPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0Q7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0Q7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0Q7
Splice isoforms : SwissVarQ5W0Q7
Catalytic activity : Enzyme3.4.22.- [ Enzyme-Expasy ]   3.4.22.-3.4.22.- [ IntEnz-EBI ]   3.4.22.- [ BRENDA ]   3.4.22.- [ KEGG ]   
PhosPhoSitePlusQ5W0Q7
Domaine pattern : Prosite (Expaxy)USP_3 (PS50235)   
Domains : Interpro (EBI)DUF4650    Peptidase_C98    SUMO_USPL1    USP_dom   
Domain families : Pfam (Sanger)DUF4650 (PF15509)    Peptidase_C98 (PF15499)   
Domain families : Pfam (NCBI)pfam15509    pfam15499   
Conserved Domain (NCBI)USPL1
DMDM Disease mutations10208
Blocks (Seattle)USPL1
SuperfamilyQ5W0Q7
Human Protein AtlasENSG00000132952
Peptide AtlasQ5W0Q7
HPRD09833
IPIIPI00024818   IPI00830079   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0Q7
IntAct (EBI)Q5W0Q7
FunCoupENSG00000132952
BioGRIDUSPL1
STRING (EMBL)USPL1
ZODIACUSPL1
Ontologies - Pathways
QuickGOQ5W0Q7
Ontology : AmiGOprotein binding  extracellular space  cell proliferation  Cajal body  protein desumoylation  Cajal body organization  SUMO binding  ubiquitin binding  SUMO-specific isopeptidase activity  
Ontology : EGO-EBIprotein binding  extracellular space  cell proliferation  Cajal body  protein desumoylation  Cajal body organization  SUMO binding  ubiquitin binding  SUMO-specific isopeptidase activity  
NDEx NetworkUSPL1
Atlas of Cancer Signalling NetworkUSPL1
Wikipedia pathwaysUSPL1
Orthology - Evolution
OrthoDB10208
GeneTree (enSembl)ENSG00000132952
Phylogenetic Trees/Animal Genes : TreeFamUSPL1
HOVERGENQ5W0Q7
HOGENOMQ5W0Q7
Homologs : HomoloGeneUSPL1
Homology/Alignments : Family Browser (UCSC)USPL1
Gene fusions - Rearrangements
Fusion : MitelmanUSPL1/IGSF8 [13q12.3/1q23.2]  
Fusion: TCGAUSPL1 13q12.3 IGSF8 1q23.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USPL1
dbVarUSPL1
ClinVarUSPL1
1000_GenomesUSPL1 
Exome Variant ServerUSPL1
ExAC (Exome Aggregation Consortium)USPL1 (select the gene name)
Genetic variants : HAPMAP10208
Genomic Variants (DGV)USPL1 [DGVbeta]
DECIPHER (Syndromes)13:31191830-31233686  ENSG00000132952
CONAN: Copy Number AnalysisUSPL1 
Mutations
ICGC Data PortalUSPL1 
TCGA Data PortalUSPL1 
Broad Tumor PortalUSPL1
OASIS PortalUSPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USPL1
DgiDB (Drug Gene Interaction Database)USPL1
DoCM (Curated mutations)USPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USPL1 (select a term)
intoGenUSPL1
Cancer3DUSPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUSPL1
Genetic Testing Registry USPL1
NextProtQ5W0Q7 [Medical]
TSGene10208
GENETestsUSPL1
Huge Navigator USPL1 [HugePedia]
snp3D : Map Gene to Disease10208
BioCentury BCIQUSPL1
ClinGenUSPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10208
Chemical/Pharm GKB GenePA134872379
Clinical trialUSPL1
Miscellaneous
canSAR (ICR)USPL1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSPL1
EVEXUSPL1
GoPubMedUSPL1
iHOPUSPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:33:41 CET 2017

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