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UTF1 (undifferentiated embryonic cell transcription factor 1)

Identity

Other alias-
HGNC (Hugo) UTF1
LocusID (NCBI) 8433
Atlas_Id 51719
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 135043778 and ends at 135045062 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTF1   12634
Cards
Entrez_Gene (NCBI)UTF1  8433  undifferentiated embryonic cell transcription factor 1
Aliases
GeneCards (Weizmann)UTF1
Ensembl hg19 (Hinxton)ENSG00000171794 [Gene_View]  chr10:135043778-135045062 [Contig_View]  UTF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171794 [Gene_View]  chr10:135043778-135045062 [Contig_View]  UTF1 [Vega]
ICGC DataPortalENSG00000171794
TCGA cBioPortalUTF1
AceView (NCBI)UTF1
Genatlas (Paris)UTF1
WikiGenes8433
SOURCE (Princeton)UTF1
Genetics Home Reference (NIH)UTF1
Genomic and cartography
GoldenPath hg19 (UCSC)UTF1  -     chr10:135043778-135045062 +  10q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UTF1  -     10q26.3   [Description]    (hg38-Dec_2013)
EnsemblUTF1 - 10q26.3 [CytoView hg19]  UTF1 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIUTF1 [Mapview hg19]  UTF1 [Mapview hg38]
OMIM604130   
Gene and transcription
Genbank (Entrez)AB011076 AY606112 BC166624
RefSeq transcript (Entrez)NM_003577
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929377
Consensus coding sequences : CCDS (NCBI)UTF1
Cluster EST : UnigeneHs.458406 [ NCBI ]
CGAP (NCI)Hs.458406
Alternative Splicing GalleryENSG00000171794
Gene ExpressionUTF1 [ NCBI-GEO ]   UTF1 [ EBI - ARRAY_EXPRESS ]   UTF1 [ SEEK ]   UTF1 [ MEM ]
Gene Expression Viewer (FireBrowse)UTF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8433
GTEX Portal (Tissue expression)UTF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T230   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T230  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T230
Splice isoforms : SwissVarQ5T230
PhosPhoSitePlusQ5T230
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UTF1
DMDM Disease mutations8433
Blocks (Seattle)UTF1
SuperfamilyQ5T230
Human Protein AtlasENSG00000171794
Peptide AtlasQ5T230
HPRD11964
IPIIPI00020668   
Protein Interaction databases
DIP (DOE-UCLA)Q5T230
IntAct (EBI)Q5T230
FunCoupENSG00000171794
BioGRIDUTF1
STRING (EMBL)UTF1
ZODIACUTF1
Ontologies - Pathways
QuickGOQ5T230
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  male gonad development  positive regulation of transcription from RNA polymerase II promoter  HMG box domain binding  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  male gonad development  positive regulation of transcription from RNA polymerase II promoter  HMG box domain binding  
NDEx NetworkUTF1
Atlas of Cancer Signalling NetworkUTF1
Wikipedia pathwaysUTF1
Orthology - Evolution
OrthoDB8433
GeneTree (enSembl)ENSG00000171794
Phylogenetic Trees/Animal Genes : TreeFamUTF1
HOVERGENQ5T230
HOGENOMQ5T230
Homologs : HomoloGeneUTF1
Homology/Alignments : Family Browser (UCSC)UTF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTF1
dbVarUTF1
ClinVarUTF1
1000_GenomesUTF1 
Exome Variant ServerUTF1
ExAC (Exome Aggregation Consortium)UTF1 (select the gene name)
Genetic variants : HAPMAP8433
Genomic Variants (DGV)UTF1 [DGVbeta]
DECIPHER (Syndromes)10:135043778-135045062  ENSG00000171794
CONAN: Copy Number AnalysisUTF1 
Mutations
ICGC Data PortalUTF1 
TCGA Data PortalUTF1 
Broad Tumor PortalUTF1
OASIS PortalUTF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTF1
DgiDB (Drug Gene Interaction Database)UTF1
DoCM (Curated mutations)UTF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTF1 (select a term)
intoGenUTF1
Cancer3DUTF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604130   
Orphanet
MedgenUTF1
Genetic Testing Registry UTF1
NextProtQ5T230 [Medical]
TSGene8433
GENETestsUTF1
Huge Navigator UTF1 [HugePedia]
snp3D : Map Gene to Disease8433
BioCentury BCIQUTF1
ClinGenUTF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8433
Chemical/Pharm GKB GenePA37259
Clinical trialUTF1
Miscellaneous
canSAR (ICR)UTF1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTF1
EVEXUTF1
GoPubMedUTF1
iHOPUTF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:24:36 CEST 2017

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