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UTF1 (undifferentiated embryonic cell transcription factor 1)

Identity

Alias (NCBI)-
HGNC (Hugo) UTF1
LocusID (NCBI) 8433
Atlas_Id 51719
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133230217 and ends at 133231558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UTF1   12634
Cards
Entrez_Gene (NCBI)UTF1    undifferentiated embryonic cell transcription factor 1
Aliases
GeneCards (Weizmann)UTF1
Ensembl hg19 (Hinxton)ENSG00000171794 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171794 [Gene_View]  ENSG00000171794 [Sequence]  chr10:133230217-133231558 [Contig_View]  UTF1 [Vega]
ICGC DataPortalENSG00000171794
TCGA cBioPortalUTF1
AceView (NCBI)UTF1
Genatlas (Paris)UTF1
SOURCE (Princeton)UTF1
Genetics Home Reference (NIH)UTF1
Genomic and cartography
GoldenPath hg38 (UCSC)UTF1  -     chr10:133230217-133231558 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTF1  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathUTF1 - 10q26.3 [CytoView hg19]  UTF1 - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000171794
Genome Data Viewer NCBIUTF1 [Mapview hg19]  
OMIM604130   
Gene and transcription
Genbank (Entrez)AB011076 AY606112
RefSeq transcript (Entrez)NM_003577
Consensus coding sequences : CCDS (NCBI)UTF1
Gene ExpressionUTF1 [ NCBI-GEO ]   UTF1 [ EBI - ARRAY_EXPRESS ]   UTF1 [ SEEK ]   UTF1 [ MEM ]
Gene Expression Viewer (FireBrowse)UTF1 [ Firebrowse - Broad ]
GenevisibleExpression of UTF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8433
GTEX Portal (Tissue expression)UTF1
Human Protein AtlasENSG00000171794-UTF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T230   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T230  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T230
PhosPhoSitePlusQ5T230
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UTF1
SuperfamilyQ5T230
AlphaFold pdb e-kbQ5T230   
Human Protein Atlas [tissue]ENSG00000171794-UTF1 [tissue]
HPRD11964
Protein Interaction databases
DIP (DOE-UCLA)Q5T230
IntAct (EBI)Q5T230
BioGRIDUTF1
STRING (EMBL)UTF1
ZODIACUTF1
Ontologies - Pathways
QuickGOQ5T230
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  male gonad development  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  male gonad development  positive regulation of transcription by RNA polymerase II  
NDEx NetworkUTF1
Atlas of Cancer Signalling NetworkUTF1
Wikipedia pathwaysUTF1
Orthology - Evolution
OrthoDB8433
GeneTree (enSembl)ENSG00000171794
Phylogenetic Trees/Animal Genes : TreeFamUTF1
Homologs : HomoloGeneUTF1
Homology/Alignments : Family Browser (UCSC)UTF1
Gene fusions - Rearrangements
Fusion : QuiverUTF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTF1
dbVarUTF1
ClinVarUTF1
MonarchUTF1
1000_GenomesUTF1 
Exome Variant ServerUTF1
GNOMAD BrowserENSG00000171794
Varsome BrowserUTF1
ACMGUTF1 variants
VarityQ5T230
Genomic Variants (DGV)UTF1 [DGVbeta]
DECIPHERUTF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTF1 
Mutations
ICGC Data PortalUTF1 
TCGA Data PortalUTF1 
Broad Tumor PortalUTF1
OASIS PortalUTF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUTF1
Mutations and Diseases : HGMDUTF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUTF1
DgiDB (Drug Gene Interaction Database)UTF1
DoCM (Curated mutations)UTF1
CIViC (Clinical Interpretations of Variants in Cancer)UTF1
Cancer3DUTF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604130   
Orphanet
DisGeNETUTF1
MedgenUTF1
Genetic Testing Registry UTF1
NextProtQ5T230 [Medical]
GENETestsUTF1
Target ValidationUTF1
Huge Navigator UTF1 [HugePedia]
ClinGenUTF1
Clinical trials, drugs, therapy
MyCancerGenomeUTF1
Protein Interactions : CTDUTF1
Pharm GKB GenePA37259
PharosQ5T230
Clinical trialUTF1
Miscellaneous
canSAR (ICR)UTF1
HarmonizomeUTF1
DataMed IndexUTF1
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUTF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:37:49 CEST 2021

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