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UTP11 (UTP11, small subunit processome component homolog (S. cerevisiae))

Identity

Alias_namesUTP11L
UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)
Alias_symbol (synonym)CGI-94
Other aliasCGI94
HGNC (Hugo) UTP11
LocusID (NCBI) 51118
Atlas_Id 78326
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38012712 and ends at 38024825 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP11   24329
Cards
Entrez_Gene (NCBI)UTP11  51118  UTP11, small subunit processome component homolog (S. cerevisiae)
AliasesCGI-94; CGI94; UTP11L
GeneCards (Weizmann)UTP11
Ensembl hg19 (Hinxton)ENSG00000183520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183520 [Gene_View]  chr1:38012712-38024825 [Contig_View]  UTP11 [Vega]
ICGC DataPortalENSG00000183520
TCGA cBioPortalUTP11
AceView (NCBI)UTP11
Genatlas (Paris)UTP11
WikiGenes51118
SOURCE (Princeton)UTP11
Genetics Home Reference (NIH)UTP11
Genomic and cartography
GoldenPath hg38 (UCSC)UTP11  -     chr1:38012712-38024825 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP11  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblUTP11 - 1p34.3 [CytoView hg19]  UTP11 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIUTP11 [Mapview hg19]  UTP11 [Mapview hg38]
OMIM609440   
Gene and transcription
Genbank (Entrez)AF067802 AF151852 AK023587 AK291900 AK296018
RefSeq transcript (Entrez)NM_016037
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UTP11
Cluster EST : UnigeneHs.637686 [ NCBI ]
CGAP (NCI)Hs.637686
Alternative Splicing GalleryENSG00000183520
Gene ExpressionUTP11 [ NCBI-GEO ]   UTP11 [ EBI - ARRAY_EXPRESS ]   UTP11 [ SEEK ]   UTP11 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51118
GTEX Portal (Tissue expression)UTP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3A2
Splice isoforms : SwissVarQ9Y3A2
PhosPhoSitePlusQ9Y3A2
Domains : Interpro (EBI)SSU_processome_Utp11   
Domain families : Pfam (Sanger)Utp11 (PF03998)   
Domain families : Pfam (NCBI)pfam03998   
Conserved Domain (NCBI)UTP11
DMDM Disease mutations51118
Blocks (Seattle)UTP11
SuperfamilyQ9Y3A2
Human Protein AtlasENSG00000183520
Peptide AtlasQ9Y3A2
HPRD16711
IPIIPI00180454   IPI01014233   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3A2
IntAct (EBI)Q9Y3A2
FunCoupENSG00000183520
BioGRIDUTP11
STRING (EMBL)UTP11
ZODIACUTP11
Ontologies - Pathways
QuickGOQ9Y3A2
Ontology : AmiGORNA binding  protein binding  extracellular space  nucleoplasm  nucleolus  cytoplasm  rRNA processing  rRNA processing  nervous system development  small-subunit processome  ribosomal small subunit biogenesis  positive regulation of apoptotic process  
Ontology : EGO-EBIRNA binding  protein binding  extracellular space  nucleoplasm  nucleolus  cytoplasm  rRNA processing  rRNA processing  nervous system development  small-subunit processome  ribosomal small subunit biogenesis  positive regulation of apoptotic process  
NDEx NetworkUTP11
Atlas of Cancer Signalling NetworkUTP11
Wikipedia pathwaysUTP11
Orthology - Evolution
OrthoDB51118
GeneTree (enSembl)ENSG00000183520
Phylogenetic Trees/Animal Genes : TreeFamUTP11
HOVERGENQ9Y3A2
HOGENOMQ9Y3A2
Homologs : HomoloGeneUTP11
Homology/Alignments : Family Browser (UCSC)UTP11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP11
dbVarUTP11
ClinVarUTP11
1000_GenomesUTP11 
Exome Variant ServerUTP11
ExAC (Exome Aggregation Consortium)UTP11 (select the gene name)
Genetic variants : HAPMAP51118
Genomic Variants (DGV)UTP11 [DGVbeta]
DECIPHERUTP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP11 
Mutations
ICGC Data PortalUTP11 
TCGA Data PortalUTP11 
Broad Tumor PortalUTP11
OASIS PortalUTP11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUTP11
BioMutasearch UTP11
DgiDB (Drug Gene Interaction Database)UTP11
DoCM (Curated mutations)UTP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP11 (select a term)
intoGenUTP11
Cancer3DUTP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609440   
Orphanet
MedgenUTP11
Genetic Testing Registry UTP11
NextProtQ9Y3A2 [Medical]
TSGene51118
GENETestsUTP11
Huge Navigator UTP11 [HugePedia]
snp3D : Map Gene to Disease51118
BioCentury BCIQUTP11
ClinGenUTP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51118
Chemical/Pharm GKB GenePA142670630
Clinical trialUTP11
Miscellaneous
canSAR (ICR)UTP11 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP11
EVEXUTP11
GoPubMedUTP11
iHOPUTP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:03 CEST 2017

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