Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UTP11L (UTP11-like, U3 small nucleolar ribonucleoprotein (yeast))

Identity

Other aliasCGI-94
CGI94
HGNC (Hugo) UTP11L
LocusID (NCBI) 51118
Atlas_Id 75572
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38478384 and ends at 38490497 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP11L   24329
Cards
Entrez_Gene (NCBI)UTP11L  51118  UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)
AliasesCGI-94; CGI94
GeneCards (Weizmann)UTP11L
Ensembl hg19 (Hinxton)ENSG00000183520 [Gene_View]  chr1:38478384-38490497 [Contig_View]  UTP11L [Vega]
Ensembl hg38 (Hinxton)ENSG00000183520 [Gene_View]  chr1:38478384-38490497 [Contig_View]  UTP11L [Vega]
ICGC DataPortalENSG00000183520
TCGA cBioPortalUTP11L
AceView (NCBI)UTP11L
Genatlas (Paris)UTP11L
WikiGenes51118
SOURCE (Princeton)UTP11L
Genetics Home Reference (NIH)UTP11L
Genomic and cartography
GoldenPath hg19 (UCSC)UTP11L  -     chr1:38478384-38490497 +  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UTP11L  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblUTP11L - 1p34.3 [CytoView hg19]  UTP11L - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIUTP11L [Mapview hg19]  UTP11L [Mapview hg38]
OMIM609440   
Gene and transcription
Genbank (Entrez)AF067802 AF151852 AK023587 AK291900 AK296018
RefSeq transcript (Entrez)NM_016037
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)UTP11L
Cluster EST : UnigeneHs.637686 [ NCBI ]
CGAP (NCI)Hs.637686
Alternative Splicing GalleryENSG00000183520
Gene ExpressionUTP11L [ NCBI-GEO ]   UTP11L [ EBI - ARRAY_EXPRESS ]   UTP11L [ SEEK ]   UTP11L [ MEM ]
Gene Expression Viewer (FireBrowse)UTP11L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51118
GTEX Portal (Tissue expression)UTP11L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3A2
Splice isoforms : SwissVarQ9Y3A2
PhosPhoSitePlusQ9Y3A2
Domains : Interpro (EBI)SSU_processome_Utp11   
Domain families : Pfam (Sanger)Utp11 (PF03998)   
Domain families : Pfam (NCBI)pfam03998   
Conserved Domain (NCBI)UTP11L
DMDM Disease mutations51118
Blocks (Seattle)UTP11L
SuperfamilyQ9Y3A2
Human Protein AtlasENSG00000183520
Peptide AtlasQ9Y3A2
HPRD16711
IPIIPI00180454   IPI01014233   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3A2
IntAct (EBI)Q9Y3A2
FunCoupENSG00000183520
BioGRIDUTP11L
STRING (EMBL)UTP11L
ZODIACUTP11L
Ontologies - Pathways
QuickGOQ9Y3A2
Ontology : AmiGOprotein binding  extracellular space  nucleolus  cytoplasm  rRNA processing  nervous system development  small-subunit processome  positive regulation of apoptotic process  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  extracellular space  nucleolus  cytoplasm  rRNA processing  nervous system development  small-subunit processome  positive regulation of apoptotic process  poly(A) RNA binding  
NDEx NetworkUTP11L
Atlas of Cancer Signalling NetworkUTP11L
Wikipedia pathwaysUTP11L
Orthology - Evolution
OrthoDB51118
GeneTree (enSembl)ENSG00000183520
Phylogenetic Trees/Animal Genes : TreeFamUTP11L
HOVERGENQ9Y3A2
HOGENOMQ9Y3A2
Homologs : HomoloGeneUTP11L
Homology/Alignments : Family Browser (UCSC)UTP11L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP11L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP11L
dbVarUTP11L
ClinVarUTP11L
1000_GenomesUTP11L 
Exome Variant ServerUTP11L
ExAC (Exome Aggregation Consortium)UTP11L (select the gene name)
Genetic variants : HAPMAP51118
Genomic Variants (DGV)UTP11L [DGVbeta]
DECIPHER (Syndromes)1:38478384-38490497  ENSG00000183520
CONAN: Copy Number AnalysisUTP11L 
Mutations
ICGC Data PortalUTP11L 
TCGA Data PortalUTP11L 
Broad Tumor PortalUTP11L
OASIS PortalUTP11L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP11L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP11L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP11L
DgiDB (Drug Gene Interaction Database)UTP11L
DoCM (Curated mutations)UTP11L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP11L (select a term)
intoGenUTP11L
Cancer3DUTP11L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609440   
Orphanet
MedgenUTP11L
Genetic Testing Registry UTP11L
NextProtQ9Y3A2 [Medical]
TSGene51118
GENETestsUTP11L
Huge Navigator UTP11L [HugePedia]
snp3D : Map Gene to Disease51118
BioCentury BCIQUTP11L
ClinGenUTP11L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51118
Chemical/Pharm GKB GenePA142670630
Clinical trialUTP11L
Miscellaneous
canSAR (ICR)UTP11L (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP11L
EVEXUTP11L
GoPubMedUTP11L
iHOPUTP11L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:07 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.