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UTP14A (UTP14A small subunit processome component)

Identity

Alias_namesSDCCAG16
serologically defined colon cancer antigen 16
UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
Alias_symbol (synonym)NY-CO-16
Other aliasNYCO16
dJ537K23.3
HGNC (Hugo) UTP14A
LocusID (NCBI) 10813
Atlas_Id 42229
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 129906121 and ends at 129929762 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UTP14A (Xq26.1) / BACE2 (21q22.2)UTP14A (Xq26.1) / TRAF3 (14q32.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP14A   10665
Cards
Entrez_Gene (NCBI)UTP14A  10813  UTP14A small subunit processome component
AliasesNYCO16; SDCCAG16; dJ537K23.3
GeneCards (Weizmann)UTP14A
Ensembl hg19 (Hinxton)ENSG00000156697 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156697 [Gene_View]  chrX:129906121-129929762 [Contig_View]  UTP14A [Vega]
ICGC DataPortalENSG00000156697
TCGA cBioPortalUTP14A
AceView (NCBI)UTP14A
Genatlas (Paris)UTP14A
WikiGenes10813
SOURCE (Princeton)UTP14A
Genetics Home Reference (NIH)UTP14A
Genomic and cartography
GoldenPath hg38 (UCSC)UTP14A  -     chrX:129906121-129929762 +  Xq26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP14A  -     Xq26.1   [Description]    (hg19-Feb_2009)
EnsemblUTP14A - Xq26.1 [CytoView hg19]  UTP14A - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIUTP14A [Mapview hg19]  UTP14A [Mapview hg38]
OMIM300508   
Gene and transcription
Genbank (Entrez)AK094408 AK291918 AK298578 AK304563 BC001149
RefSeq transcript (Entrez)NM_001166221 NM_006649
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UTP14A
Cluster EST : UnigeneHs.458598 [ NCBI ]
CGAP (NCI)Hs.458598
Alternative Splicing GalleryENSG00000156697
Gene ExpressionUTP14A [ NCBI-GEO ]   UTP14A [ EBI - ARRAY_EXPRESS ]   UTP14A [ SEEK ]   UTP14A [ MEM ]
Gene Expression Viewer (FireBrowse)UTP14A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10813
GTEX Portal (Tissue expression)UTP14A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVJ6
Splice isoforms : SwissVarQ9BVJ6
PhosPhoSitePlusQ9BVJ6
Domains : Interpro (EBI)SSU_processome_Utp14   
Domain families : Pfam (Sanger)Utp14 (PF04615)   
Domain families : Pfam (NCBI)pfam04615   
Conserved Domain (NCBI)UTP14A
DMDM Disease mutations10813
Blocks (Seattle)UTP14A
SuperfamilyQ9BVJ6
Human Protein AtlasENSG00000156697
Peptide AtlasQ9BVJ6
HPRD06712
IPIIPI00107113   IPI00940505   IPI00872922   IPI00607550   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVJ6
IntAct (EBI)Q9BVJ6
FunCoupENSG00000156697
BioGRIDUTP14A
STRING (EMBL)UTP14A
ZODIACUTP14A
Ontologies - Pathways
QuickGOQ9BVJ6
Ontology : AmiGORNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  cytosol  rRNA processing  maturation of SSU-rRNA  small-subunit processome  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  cytosol  rRNA processing  maturation of SSU-rRNA  small-subunit processome  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkUTP14A
Atlas of Cancer Signalling NetworkUTP14A
Wikipedia pathwaysUTP14A
Orthology - Evolution
OrthoDB10813
GeneTree (enSembl)ENSG00000156697
Phylogenetic Trees/Animal Genes : TreeFamUTP14A
HOVERGENQ9BVJ6
HOGENOMQ9BVJ6
Homologs : HomoloGeneUTP14A
Homology/Alignments : Family Browser (UCSC)UTP14A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP14A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP14A
dbVarUTP14A
ClinVarUTP14A
1000_GenomesUTP14A 
Exome Variant ServerUTP14A
ExAC (Exome Aggregation Consortium)UTP14A (select the gene name)
Genetic variants : HAPMAP10813
Genomic Variants (DGV)UTP14A [DGVbeta]
DECIPHERUTP14A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP14A 
Mutations
ICGC Data PortalUTP14A 
TCGA Data PortalUTP14A 
Broad Tumor PortalUTP14A
OASIS PortalUTP14A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP14A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP14A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP14A
DgiDB (Drug Gene Interaction Database)UTP14A
DoCM (Curated mutations)UTP14A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP14A (select a term)
intoGenUTP14A
Cancer3DUTP14A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300508   
Orphanet
MedgenUTP14A
Genetic Testing Registry UTP14A
NextProtQ9BVJ6 [Medical]
TSGene10813
GENETestsUTP14A
Target ValidationUTP14A
Huge Navigator UTP14A [HugePedia]
snp3D : Map Gene to Disease10813
BioCentury BCIQUTP14A
ClinGenUTP14A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10813
Chemical/Pharm GKB GenePA35595
Clinical trialUTP14A
Miscellaneous
canSAR (ICR)UTP14A (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP14A
EVEXUTP14A
GoPubMedUTP14A
iHOPUTP14A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:17 CEST 2017

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