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UTP15 (UTP15, small subunit processome component)

Identity

Alias_namesUTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)
UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)
UTP15 SSU processome component
Alias_symbol (synonym)FLJ12787
NET21
FLJ23637
Other alias
HGNC (Hugo) UTP15
LocusID (NCBI) 84135
Atlas_Id 54764
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 73565741 and ends at 73583377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGEF28 (5q13.2) / UTP15 (5q13.2)LRFN2 (6p21.2) / UTP15 (5q13.2)UTP15 (5q13.2) / EGLN3 (14q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Adenocarcinoma


External links

Nomenclature
HGNC (Hugo)UTP15   25758
Cards
Entrez_Gene (NCBI)UTP15  84135  UTP15, small subunit processome component
AliasesNET21
GeneCards (Weizmann)UTP15
Ensembl hg19 (Hinxton)ENSG00000164338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164338 [Gene_View]  chr5:73565741-73583377 [Contig_View]  UTP15 [Vega]
ICGC DataPortalENSG00000164338
TCGA cBioPortalUTP15
AceView (NCBI)UTP15
Genatlas (Paris)UTP15
WikiGenes84135
SOURCE (Princeton)UTP15
Genetics Home Reference (NIH)UTP15
Genomic and cartography
GoldenPath hg38 (UCSC)UTP15  -     chr5:73565741-73583377 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP15  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblUTP15 - 5q13.2 [CytoView hg19]  UTP15 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIUTP15 [Mapview hg19]  UTP15 [Mapview hg38]
OMIM616194   
Gene and transcription
Genbank (Entrez)AK022849 AK074217 AK300525 AK302021 AL520195
RefSeq transcript (Entrez)NM_001284430 NM_001284431 NM_032175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UTP15
Cluster EST : UnigeneHs.406703 [ NCBI ]
CGAP (NCI)Hs.406703
Alternative Splicing GalleryENSG00000164338
Gene ExpressionUTP15 [ NCBI-GEO ]   UTP15 [ EBI - ARRAY_EXPRESS ]   UTP15 [ SEEK ]   UTP15 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84135
GTEX Portal (Tissue expression)UTP15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TED0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TED0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TED0
Splice isoforms : SwissVarQ8TED0
PhosPhoSitePlusQ8TED0
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)U3_snoRNA-assocProt_15_C    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)UTP15_C (PF09384)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam09384    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)UTP15
DMDM Disease mutations84135
Blocks (Seattle)UTP15
SuperfamilyQ8TED0
Human Protein AtlasENSG00000164338
Peptide AtlasQ8TED0
HPRD07796
IPIIPI00152708   IPI00967515   IPI00967090   IPI00966492   IPI00967065   
Protein Interaction databases
DIP (DOE-UCLA)Q8TED0
IntAct (EBI)Q8TED0
FunCoupENSG00000164338
BioGRIDUTP15
STRING (EMBL)UTP15
ZODIACUTP15
Ontologies - Pathways
QuickGOQ8TED0
Ontology : AmiGOfibrillar center  RNA binding  protein binding  nucleoplasm  nucleolus  cytoplasm  endoplasmic reticulum  rRNA processing  positive regulation of transcription from RNA polymerase I promoter  positive regulation of rRNA processing  
Ontology : EGO-EBIfibrillar center  RNA binding  protein binding  nucleoplasm  nucleolus  cytoplasm  endoplasmic reticulum  rRNA processing  positive regulation of transcription from RNA polymerase I promoter  positive regulation of rRNA processing  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkUTP15
Atlas of Cancer Signalling NetworkUTP15
Wikipedia pathwaysUTP15
Orthology - Evolution
OrthoDB84135
GeneTree (enSembl)ENSG00000164338
Phylogenetic Trees/Animal Genes : TreeFamUTP15
HOVERGENQ8TED0
HOGENOMQ8TED0
Homologs : HomoloGeneUTP15
Homology/Alignments : Family Browser (UCSC)UTP15
Gene fusions - Rearrangements
Fusion : MitelmanARHGEF28/UTP15 [5q13.2/5q13.2]  [t(5;5)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP15
dbVarUTP15
ClinVarUTP15
1000_GenomesUTP15 
Exome Variant ServerUTP15
ExAC (Exome Aggregation Consortium)UTP15 (select the gene name)
Genetic variants : HAPMAP84135
Genomic Variants (DGV)UTP15 [DGVbeta]
DECIPHERUTP15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP15 
Mutations
ICGC Data PortalUTP15 
TCGA Data PortalUTP15 
Broad Tumor PortalUTP15
OASIS PortalUTP15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP15
DgiDB (Drug Gene Interaction Database)UTP15
DoCM (Curated mutations)UTP15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP15 (select a term)
intoGenUTP15
Cancer3DUTP15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616194   
Orphanet
MedgenUTP15
Genetic Testing Registry UTP15
NextProtQ8TED0 [Medical]
TSGene84135
GENETestsUTP15
Target ValidationUTP15
Huge Navigator UTP15 [HugePedia]
snp3D : Map Gene to Disease84135
BioCentury BCIQUTP15
ClinGenUTP15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84135
Chemical/Pharm GKB GenePA142670631
Clinical trialUTP15
Miscellaneous
canSAR (ICR)UTP15 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP15
EVEXUTP15
GoPubMedUTP15
iHOPUTP15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:18 CEST 2017

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