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UTP15 (UTP15 small subunit processome component)

Identity

Alias (NCBI)NET21
HGNC (Hugo) UTP15
HGNC Alias symbFLJ12787
NET21
FLJ23637
HGNC Previous nameUTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)
 UTP15 SSU processome component
LocusID (NCBI) 84135
Atlas_Id 54764
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 73565743 and ends at 73583380 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF28 (5q13.2) / UTP15 (5q13.2)LRFN2 (6p21.2) / UTP15 (5q13.2)UTP15 (5q13.2) / EGLN3 (14q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UTP15   25758
Cards
Entrez_Gene (NCBI)UTP15    UTP15 small subunit processome component
AliasesNET21
GeneCards (Weizmann)UTP15
Ensembl hg19 (Hinxton)ENSG00000164338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164338 [Gene_View]  ENSG00000164338 [Sequence]  chr5:73565743-73583380 [Contig_View]  UTP15 [Vega]
ICGC DataPortalENSG00000164338
TCGA cBioPortalUTP15
AceView (NCBI)UTP15
Genatlas (Paris)UTP15
SOURCE (Princeton)UTP15
Genetics Home Reference (NIH)UTP15
Genomic and cartography
GoldenPath hg38 (UCSC)UTP15  -     chr5:73565743-73583380 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP15  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathUTP15 - 5q13.2 [CytoView hg19]  UTP15 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000164338
Genome Data Viewer NCBIUTP15 [Mapview hg19]  
OMIM616194   
Gene and transcription
Genbank (Entrez)AK022849 AK074217 AK300525 AK302021 AL520195
RefSeq transcript (Entrez)NM_001284430 NM_001284431 NM_032175
Consensus coding sequences : CCDS (NCBI)UTP15
Gene ExpressionUTP15 [ NCBI-GEO ]   UTP15 [ EBI - ARRAY_EXPRESS ]   UTP15 [ SEEK ]   UTP15 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP15 [ Firebrowse - Broad ]
GenevisibleExpression of UTP15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84135
GTEX Portal (Tissue expression)UTP15
Human Protein AtlasENSG00000164338-UTP15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TED0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TED0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TED0
PhosPhoSitePlusQ8TED0
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)U3_snoRNA-assocProt_15_C    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)UTP15_C (PF09384)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam09384    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)UTP15
SuperfamilyQ8TED0
AlphaFold pdb e-kbQ8TED0   
Human Protein Atlas [tissue]ENSG00000164338-UTP15 [tissue]
HPRD07796
Protein Interaction databases
DIP (DOE-UCLA)Q8TED0
IntAct (EBI)Q8TED0
BioGRIDUTP15
STRING (EMBL)UTP15
ZODIACUTP15
Ontologies - Pathways
QuickGOQ8TED0
Ontology : AmiGOfibrillar center  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  cytoplasm  endoplasmic reticulum  rRNA processing  rRNA processing  positive regulation of transcription by RNA polymerase I  positive regulation of transcription by RNA polymerase I  positive regulation of rRNA processing  
Ontology : EGO-EBIfibrillar center  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  cytoplasm  endoplasmic reticulum  rRNA processing  rRNA processing  positive regulation of transcription by RNA polymerase I  positive regulation of transcription by RNA polymerase I  positive regulation of rRNA processing  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkUTP15
Atlas of Cancer Signalling NetworkUTP15
Wikipedia pathwaysUTP15
Orthology - Evolution
OrthoDB84135
GeneTree (enSembl)ENSG00000164338
Phylogenetic Trees/Animal Genes : TreeFamUTP15
Homologs : HomoloGeneUTP15
Homology/Alignments : Family Browser (UCSC)UTP15
Gene fusions - Rearrangements
Fusion : MitelmanARHGEF28/UTP15 [5q13.2/5q13.2]  
Fusion : QuiverUTP15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP15
dbVarUTP15
ClinVarUTP15
MonarchUTP15
1000_GenomesUTP15 
Exome Variant ServerUTP15
GNOMAD BrowserENSG00000164338
Varsome BrowserUTP15
ACMGUTP15 variants
VarityQ8TED0
Genomic Variants (DGV)UTP15 [DGVbeta]
DECIPHERUTP15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP15 
Mutations
ICGC Data PortalUTP15 
TCGA Data PortalUTP15 
Broad Tumor PortalUTP15
OASIS PortalUTP15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUTP15
Mutations and Diseases : HGMDUTP15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUTP15
DgiDB (Drug Gene Interaction Database)UTP15
DoCM (Curated mutations)UTP15
CIViC (Clinical Interpretations of Variants in Cancer)UTP15
Cancer3DUTP15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616194   
Orphanet
DisGeNETUTP15
MedgenUTP15
Genetic Testing Registry UTP15
NextProtQ8TED0 [Medical]
GENETestsUTP15
Target ValidationUTP15
Huge Navigator UTP15 [HugePedia]
ClinGenUTP15
Clinical trials, drugs, therapy
MyCancerGenomeUTP15
Protein Interactions : CTDUTP15
Pharm GKB GenePA142670631
PharosQ8TED0
Clinical trialUTP15
Miscellaneous
canSAR (ICR)UTP15
HarmonizomeUTP15
DataMed IndexUTP15
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUTP15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:49 CEST 2021

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