Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UTP18 (UTP18 small subunit (SSU) processome component homolog (yeast))

Identity

Alias_namesWDR50
WD repeat domain 50
UTP18 small subunit (SSU) processome component homolog (yeast)
Alias_symbol (synonym)CGI-48
Other alias
HGNC (Hugo) UTP18
LocusID (NCBI) 51096
Atlas_Id 75573
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 49337897 and ends at 49375292 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UBE2Z (17q21.32) / UTP18 (17q21.33)UTP18 (17q21.33) / HSPA8 (11q24.1)UTP18 (17q21.33) / UTP18 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP18   24274
Cards
Entrez_Gene (NCBI)UTP18  51096  UTP18 small subunit (SSU) processome component homolog (yeast)
AliasesCGI-48; WDR50
GeneCards (Weizmann)UTP18
Ensembl hg19 (Hinxton)ENSG00000011260 [Gene_View]  chr17:49337897-49375292 [Contig_View]  UTP18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000011260 [Gene_View]  chr17:49337897-49375292 [Contig_View]  UTP18 [Vega]
ICGC DataPortalENSG00000011260
TCGA cBioPortalUTP18
AceView (NCBI)UTP18
Genatlas (Paris)UTP18
WikiGenes51096
SOURCE (Princeton)UTP18
Genetics Home Reference (NIH)UTP18
Genomic and cartography
GoldenPath hg19 (UCSC)UTP18  -     chr17:49337897-49375292 +  17q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UTP18  -     17q21.33   [Description]    (hg38-Dec_2013)
EnsemblUTP18 - 17q21.33 [CytoView hg19]  UTP18 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBIUTP18 [Mapview hg19]  UTP18 [Mapview hg38]
OMIM612816   
Gene and transcription
Genbank (Entrez)AF151806 AK026355 AK314399 AY007138 BC001535
RefSeq transcript (Entrez)NM_016001
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)UTP18
Cluster EST : UnigeneHs.709327 [ NCBI ]
CGAP (NCI)Hs.709327
Alternative Splicing GalleryENSG00000011260
Gene ExpressionUTP18 [ NCBI-GEO ]   UTP18 [ EBI - ARRAY_EXPRESS ]   UTP18 [ SEEK ]   UTP18 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51096
GTEX Portal (Tissue expression)UTP18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5J1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5J1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5J1
Splice isoforms : SwissVarQ9Y5J1
PhosPhoSitePlusQ9Y5J1
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)Apc4_WD40 (PF12894)   
Domain families : Pfam (NCBI)pfam12894   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)UTP18
DMDM Disease mutations51096
Blocks (Seattle)UTP18
SuperfamilyQ9Y5J1
Human Protein AtlasENSG00000011260
Peptide AtlasQ9Y5J1
IPIIPI01015840   IPI00965993   IPI00966021   IPI00964214   IPI00963898   IPI00964666   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5J1
IntAct (EBI)Q9Y5J1
FunCoupENSG00000011260
BioGRIDUTP18
STRING (EMBL)UTP18
ZODIACUTP18
Ontologies - Pathways
QuickGOQ9Y5J1
Ontology : AmiGOnucleus  nucleolus  rRNA processing  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  poly(A) RNA binding  
Ontology : EGO-EBInucleus  nucleolus  rRNA processing  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  poly(A) RNA binding  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkUTP18
Atlas of Cancer Signalling NetworkUTP18
Wikipedia pathwaysUTP18
Orthology - Evolution
OrthoDB51096
GeneTree (enSembl)ENSG00000011260
Phylogenetic Trees/Animal Genes : TreeFamUTP18
HOVERGENQ9Y5J1
HOGENOMQ9Y5J1
Homologs : HomoloGeneUTP18
Homology/Alignments : Family Browser (UCSC)UTP18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP18
dbVarUTP18
ClinVarUTP18
1000_GenomesUTP18 
Exome Variant ServerUTP18
ExAC (Exome Aggregation Consortium)UTP18 (select the gene name)
Genetic variants : HAPMAP51096
Genomic Variants (DGV)UTP18 [DGVbeta]
DECIPHER (Syndromes)17:49337897-49375292  ENSG00000011260
CONAN: Copy Number AnalysisUTP18 
Mutations
ICGC Data PortalUTP18 
TCGA Data PortalUTP18 
Broad Tumor PortalUTP18
OASIS PortalUTP18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP18
DgiDB (Drug Gene Interaction Database)UTP18
DoCM (Curated mutations)UTP18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP18 (select a term)
intoGenUTP18
Cancer3DUTP18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612816   
Orphanet
MedgenUTP18
Genetic Testing Registry UTP18
NextProtQ9Y5J1 [Medical]
TSGene51096
GENETestsUTP18
Huge Navigator UTP18 [HugePedia]
snp3D : Map Gene to Disease51096
BioCentury BCIQUTP18
ClinGenUTP18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51096
Chemical/Pharm GKB GenePA134984104
Clinical trialUTP18
Miscellaneous
canSAR (ICR)UTP18 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP18
EVEXUTP18
GoPubMedUTP18
iHOPUTP18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:08 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.