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UTP23 (UTP23, small subunit (SSU) processome component, homolog (yeast))

Identity

Alias_namesC8orf53
chromosome 8 open reading frame 53
UTP23, small subunit (SSU) processome component, homolog (yeast)
Alias_symbol (synonym)MGC14595
Other alias
HGNC (Hugo) UTP23
LocusID (NCBI) 84294
Atlas_Id 75574
Location 8q24.11  [Link to chromosome band 8q24]
Location_base_pair Starts at 117778742 and ends at 117786921 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UTP23 (8q24.11) / HNRNPUL1 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP23   28224
Cards
Entrez_Gene (NCBI)UTP23  84294  UTP23, small subunit (SSU) processome component, homolog (yeast)
AliasesC8orf53
GeneCards (Weizmann)UTP23
Ensembl hg19 (Hinxton)ENSG00000147679 [Gene_View]  chr8:117778742-117786921 [Contig_View]  UTP23 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147679 [Gene_View]  chr8:117778742-117786921 [Contig_View]  UTP23 [Vega]
ICGC DataPortalENSG00000147679
TCGA cBioPortalUTP23
AceView (NCBI)UTP23
Genatlas (Paris)UTP23
WikiGenes84294
SOURCE (Princeton)UTP23
Genetics Home Reference (NIH)UTP23
Genomic and cartography
GoldenPath hg19 (UCSC)UTP23  -     chr8:117778742-117786921 +  8q24.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UTP23  -     8q24.11   [Description]    (hg38-Dec_2013)
EnsemblUTP23 - 8q24.11 [CytoView hg19]  UTP23 - 8q24.11 [CytoView hg38]
Mapping of homologs : NCBIUTP23 [Mapview hg19]  UTP23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055279 AK315770 BC005955 BC022441 BP231814
RefSeq transcript (Entrez)NM_032334
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)UTP23
Cluster EST : UnigeneHs.86970 [ NCBI ]
CGAP (NCI)Hs.86970
Alternative Splicing GalleryENSG00000147679
Gene ExpressionUTP23 [ NCBI-GEO ]   UTP23 [ EBI - ARRAY_EXPRESS ]   UTP23 [ SEEK ]   UTP23 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84294
GTEX Portal (Tissue expression)UTP23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRU9
Splice isoforms : SwissVarQ9BRU9
PhosPhoSitePlusQ9BRU9
Domains : Interpro (EBI)Fcf1/Utp23    PIN_domain-like   
Domain families : Pfam (Sanger)Fcf1 (PF04900)   
Domain families : Pfam (NCBI)pfam04900   
Conserved Domain (NCBI)UTP23
DMDM Disease mutations84294
Blocks (Seattle)UTP23
SuperfamilyQ9BRU9
Human Protein AtlasENSG00000147679
Peptide AtlasQ9BRU9
HPRD17499
IPIIPI00031612   IPI00980310   IPI00790412   IPI01012159   IPI00798138   IPI00974241   IPI00981335   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRU9
IntAct (EBI)Q9BRU9
FunCoupENSG00000147679
BioGRIDUTP23
STRING (EMBL)UTP23
ZODIACUTP23
Ontologies - Pathways
QuickGOQ9BRU9
Ontology : AmiGOprotein binding  nucleolus  rRNA processing  small-subunit processome  poly(A) RNA binding  small ribosomal subunit rRNA binding  
Ontology : EGO-EBIprotein binding  nucleolus  rRNA processing  small-subunit processome  poly(A) RNA binding  small ribosomal subunit rRNA binding  
NDEx NetworkUTP23
Atlas of Cancer Signalling NetworkUTP23
Wikipedia pathwaysUTP23
Orthology - Evolution
OrthoDB84294
GeneTree (enSembl)ENSG00000147679
Phylogenetic Trees/Animal Genes : TreeFamUTP23
HOVERGENQ9BRU9
HOGENOMQ9BRU9
Homologs : HomoloGeneUTP23
Homology/Alignments : Family Browser (UCSC)UTP23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP23
dbVarUTP23
ClinVarUTP23
1000_GenomesUTP23 
Exome Variant ServerUTP23
ExAC (Exome Aggregation Consortium)UTP23 (select the gene name)
Genetic variants : HAPMAP84294
Genomic Variants (DGV)UTP23 [DGVbeta]
DECIPHER (Syndromes)8:117778742-117786921  ENSG00000147679
CONAN: Copy Number AnalysisUTP23 
Mutations
ICGC Data PortalUTP23 
TCGA Data PortalUTP23 
Broad Tumor PortalUTP23
OASIS PortalUTP23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP23
DgiDB (Drug Gene Interaction Database)UTP23
DoCM (Curated mutations)UTP23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP23 (select a term)
intoGenUTP23
Cancer3DUTP23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUTP23
Genetic Testing Registry UTP23
NextProtQ9BRU9 [Medical]
TSGene84294
GENETestsUTP23
Huge Navigator UTP23 [HugePedia]
snp3D : Map Gene to Disease84294
BioCentury BCIQUTP23
ClinGenUTP23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84294
Chemical/Pharm GKB GenePA162408778
Clinical trialUTP23
Miscellaneous
canSAR (ICR)UTP23 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP23
EVEXUTP23
GoPubMedUTP23
iHOPUTP23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:08 CET 2017

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