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UTP25 (UTP25 small subunit processor component)

Identity

Other aliasC1orf107
DEF
DIEXF
DJ434O14.5
HGNC (Hugo) UTP25
LocusID (NCBI) 27042
Atlas_Id 57113
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209827967 and ends at 209857565 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)UTP25   28440
Cards
Entrez_Gene (NCBI)UTP25  27042  UTP25 small subunit processor component
AliasesC1orf107; DEF; DIEXF; DJ434O14.5
GeneCards (Weizmann)UTP25
Ensembl hg19 (Hinxton)ENSG00000117597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117597 [Gene_View]  ENSG00000117597 [Sequence]  chr1:209827967-209857565 [Contig_View]  UTP25 [Vega]
ICGC DataPortalENSG00000117597
TCGA cBioPortalUTP25
AceView (NCBI)UTP25
Genatlas (Paris)UTP25
WikiGenes27042
SOURCE (Princeton)UTP25
Genetics Home Reference (NIH)UTP25
Genomic and cartography
GoldenPath hg38 (UCSC)UTP25  -     chr1:209827967-209857565 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP25  -     1q32.2   [Description]    (hg19-Feb_2009)
GoldenPathUTP25 - 1q32.2 [CytoView hg19]  UTP25 - 1q32.2 [CytoView hg38]
ImmunoBaseENSG00000117597
Mapping of homologs : NCBIUTP25 [Mapview hg19]  UTP25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022766 AK096118 AK123674 AK289613 AK295799
RefSeq transcript (Entrez)NM_014388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UTP25
Cluster EST : UnigeneHs.194754 [ NCBI ]
CGAP (NCI)Hs.194754
Alternative Splicing GalleryENSG00000117597
Gene ExpressionUTP25 [ NCBI-GEO ]   UTP25 [ EBI - ARRAY_EXPRESS ]   UTP25 [ SEEK ]   UTP25 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27042
GTEX Portal (Tissue expression)UTP25
Human Protein AtlasENSG00000117597-UTP25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CQ4
Splice isoforms : SwissVarQ68CQ4
PhosPhoSitePlusQ68CQ4
Domains : Interpro (EBI)Digest_organ_expansion_fac-prd    P-loop_NTPase   
Domain families : Pfam (Sanger)UTP25 (PF06862)   
Domain families : Pfam (NCBI)pfam06862   
Conserved Domain (NCBI)UTP25
DMDM Disease mutations27042
Blocks (Seattle)UTP25
SuperfamilyQ68CQ4
Human Protein Atlas [tissue]ENSG00000117597-UTP25 [tissue]
Peptide AtlasQ68CQ4
IPIIPI00004290   IPI00017386   IPI00607869   
Protein Interaction databases
DIP (DOE-UCLA)Q68CQ4
IntAct (EBI)Q68CQ4
FunCoupENSG00000117597
BioGRIDUTP25
STRING (EMBL)UTP25
ZODIACUTP25
Ontologies - Pathways
QuickGOQ68CQ4
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  rRNA processing  multicellular organism development  rRNA binding  protein catabolic process  protein destabilization  small-subunit processome  U3 snoRNA binding  positive regulation of embryonic development  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  rRNA processing  multicellular organism development  rRNA binding  protein catabolic process  protein destabilization  small-subunit processome  U3 snoRNA binding  positive regulation of embryonic development  
NDEx NetworkUTP25
Atlas of Cancer Signalling NetworkUTP25
Wikipedia pathwaysUTP25
Orthology - Evolution
OrthoDB27042
GeneTree (enSembl)ENSG00000117597
Phylogenetic Trees/Animal Genes : TreeFamUTP25
HOGENOMQ68CQ4
Homologs : HomoloGeneUTP25
Homology/Alignments : Family Browser (UCSC)UTP25
Gene fusions - Rearrangements
Fusion : QuiverUTP25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP25
dbVarUTP25
ClinVarUTP25
1000_GenomesUTP25 
Exome Variant ServerUTP25
ExAC (Exome Aggregation Consortium)ENSG00000117597
GNOMAD BrowserENSG00000117597
Varsome BrowserUTP25
Genetic variants : HAPMAP27042
Genomic Variants (DGV)UTP25 [DGVbeta]
DECIPHERUTP25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP25 
Mutations
ICGC Data PortalUTP25 
TCGA Data PortalUTP25 
Broad Tumor PortalUTP25
OASIS PortalUTP25 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUTP25
BioMutasearch UTP25
DgiDB (Drug Gene Interaction Database)UTP25
DoCM (Curated mutations)UTP25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP25 (select a term)
intoGenUTP25
Cancer3DUTP25(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUTP25
MedgenUTP25
Genetic Testing Registry UTP25
NextProtQ68CQ4 [Medical]
TSGene27042
GENETestsUTP25
Target ValidationUTP25
Huge Navigator UTP25 [HugePedia]
snp3D : Map Gene to Disease27042
BioCentury BCIQUTP25
ClinGenUTP25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27042
Chemical/Pharm GKB GenePA142672491
Clinical trialUTP25
Miscellaneous
canSAR (ICR)UTP25 (select the gene name)
DataMed IndexUTP25
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP25
EVEXUTP25
GoPubMedUTP25
iHOPUTP25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 16:01:56 CEST 2019

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